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Cluster: HRGMv2_1807_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1807_11 HRGMv2_1807_11_23 27195 28763 + 2.A.34.1.1
TC HRGMv2_1807_11 HRGMv2_1807_11_24 29161 30753 + 2.A.34.1.1
pfam HRGMv2_1807_11 HRGMv2_1807_11_25 30778 31326 + DsbB
TC HRGMv2_1807_11 HRGMv2_1807_11_26 31634 32368 + 3.A.1.3.16
TC HRGMv2_1807_11 HRGMv2_1807_11_27 32385 33218 + 3.A.1.3.16
TC HRGMv2_1807_11 HRGMv2_1807_11_28 33281 34015 + 3.A.1.3.16
TC HRGMv2_1807_11 HRGMv2_1807_11_29 34008 34775 + 3.A.1.3.18
TC HRGMv2_1807_11 HRGMv2_1807_11_30 34789 35391 + 2.A.115.2.14
pfam HRGMv2_1807_11 HRGMv2_1807_11_31 35454 36317 - TatD_DNase
pfam HRGMv2_1807_11 HRGMv2_1807_11_32 36320 37357 - 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_1807_11 HRGMv2_1807_11_33 37354 38964 - GT83
TC HRGMv2_1807_11 HRGMv2_1807_11_34 39177 40442 - 2.A.56.1.1
pfam HRGMv2_1807_11 HRGMv2_1807_11_35 40443 40937 - DctQ
TC HRGMv2_1807_11 HRGMv2_1807_11_36 41019 42011 - 2.A.56.1.2
pfam HRGMv2_1807_11 HRGMv2_1807_11_37 42822 43790 - EamA | EamA
CAZyme HRGMv2_1807_11 HRGMv2_1807_11_38 43803 44537 - GT2
pfam HRGMv2_1807_11 HRGMv2_1807_11_39 44644 45003 + HIT | DcpS_C
NULL(UNKNOWN) HRGMv2_1807_11 HRGMv2_1807_11_40 45083 45946 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1807_11 HRGMv2_1807_11_41 45957 47891 + 3.A.1.121.4
pfam HRGMv2_1807_11 HRGMv2_1807_11_42 47903 48745 - RsmJ
TF HRGMv2_1807_11 HRGMv2_1807_11_43 48970 49392 + FUR
TC HRGMv2_1807_11 HRGMv2_1807_11_44 49394 50308 + 3.A.1.15.13
TC HRGMv2_1807_11 HRGMv2_1807_11_45 50319 51011 + 3.A.1.15.11
TC HRGMv2_1807_11 HRGMv2_1807_11_46 51008 51817 + 3.A.1.15.11
Gene ID: HRGMv2_1807_11_23
Type: TC
Location: 27195 - 28763 (+)
Gene ID: HRGMv2_1807_11_24
Type: TC
Location: 29161 - 30753 (+)
Gene ID: HRGMv2_1807_11_25
Type: pfam
Location: 30778 - 31326 (+)
Gene ID: HRGMv2_1807_11_26
Type: TC
Location: 31634 - 32368 (+)
Gene ID: HRGMv2_1807_11_27
Type: TC
Location: 32385 - 33218 (+)
Gene ID: HRGMv2_1807_11_28
Type: TC
Location: 33281 - 34015 (+)
Gene ID: HRGMv2_1807_11_29
Type: TC
Location: 34008 - 34775 (+)
Gene ID: HRGMv2_1807_11_30
Type: TC
Location: 34789 - 35391 (+)
Gene ID: HRGMv2_1807_11_31
Type: pfam
Location: 35454 - 36317 (-)
Gene ID: HRGMv2_1807_11_32
Type: pfam
Location: 36320 - 37357 (-)
Gene ID: HRGMv2_1807_11_33
Type: CAZyme
Location: 37354 - 38964 (-)
Gene ID: HRGMv2_1807_11_34
Type: TC
Location: 39177 - 40442 (-)
Gene ID: HRGMv2_1807_11_35
Type: pfam
Location: 40443 - 40937 (-)
Gene ID: HRGMv2_1807_11_36
Type: TC
Location: 41019 - 42011 (-)
Gene ID: HRGMv2_1807_11_37
Type: pfam
Location: 42822 - 43790 (-)
Gene ID: HRGMv2_1807_11_38
Type: CAZyme
Location: 43803 - 44537 (-)
Gene ID: HRGMv2_1807_11_39
Type: pfam
Location: 44644 - 45003 (+)
Gene ID: HRGMv2_1807_11_40
Type:
Location: 45083 - 45946 (+)
Gene ID: HRGMv2_1807_11_41
Type: TC
Location: 45957 - 47891 (+)
Gene ID: HRGMv2_1807_11_42
Type: pfam
Location: 47903 - 48745 (-)
Gene ID: HRGMv2_1807_11_43
Type: TF
Location: 48970 - 49392 (+)
Gene ID: HRGMv2_1807_11_44
Type: TC
Location: 49394 - 50308 (+)
Gene ID: HRGMv2_1807_11_45
Type: TC
Location: 50319 - 51011 (+)
Gene ID: HRGMv2_1807_11_46
Type: TC
Location: 51008 - 51817 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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