Cluster: HRGMv2_1802_CGC57
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1802
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1802_86 | HRGMv2_1802_86_5 | 5020 | 5739 | + | GT51 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_6 | 5819 | 6091 | - | 8.A.8.1.5 |
| pfam | HRGMv2_1802_86 | HRGMv2_1802_86_7 | 6088 | 6942 | - | RapZ-like_N | PapZ_C |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_8 | 6988 | 7479 | - | 4.A.2.1.7 |
| pfam | HRGMv2_1802_86 | HRGMv2_1802_86_9 | 7563 | 7850 | - | Ribosomal_S30AE |
| pfam | HRGMv2_1802_86 | HRGMv2_1802_86_10 | 7873 | 9306 | - | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_11 | 9353 | 10078 | - | 1.B.42.1.2 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_12 | 10085 | 10639 | - | 1.B.42.1.2 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_13 | 10608 | 11183 | - | 1.B.42.1.2 |
| pfam | HRGMv2_1802_86 | HRGMv2_1802_86_14 | 11180 | 11746 | - | Hydrolase_3 |
| STP | HRGMv2_1802_86 | HRGMv2_1802_86_15 | 11767 | 12753 | - | CBS | CBS | SIS |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_16 | 12767 | 13744 | - | 2.A.19.5.1 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_17 | 13959 | 14759 | + | 3.A.1.27.3 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_18 | 14779 | 15561 | + | 3.A.1.27.3 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_19 | 15566 | 16123 | + | 3.A.1.27.3 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_20 | 16142 | 16777 | + | 3.A.1.27.3 |
| TC | HRGMv2_1802_86 | HRGMv2_1802_86_21 | 16777 | 17070 | + | 3.A.1.27.3 |
Gene ID: HRGMv2_1802_86_5
Type: CAZyme
Location: 5020 - 5739 (+)
Type: CAZyme
Location: 5020 - 5739 (+)
Gene ID: HRGMv2_1802_86_6
Type: TC
Location: 5819 - 6091 (-)
Type: TC
Location: 5819 - 6091 (-)
Gene ID: HRGMv2_1802_86_7
Type: pfam
Location: 6088 - 6942 (-)
Type: pfam
Location: 6088 - 6942 (-)
Gene ID: HRGMv2_1802_86_8
Type: TC
Location: 6988 - 7479 (-)
Type: TC
Location: 6988 - 7479 (-)
Gene ID: HRGMv2_1802_86_9
Type: pfam
Location: 7563 - 7850 (-)
Type: pfam
Location: 7563 - 7850 (-)
Gene ID: HRGMv2_1802_86_10
Type: pfam
Location: 7873 - 9306 (-)
Type: pfam
Location: 7873 - 9306 (-)
Gene ID: HRGMv2_1802_86_11
Type: TC
Location: 9353 - 10078 (-)
Type: TC
Location: 9353 - 10078 (-)
Gene ID: HRGMv2_1802_86_12
Type: TC
Location: 10085 - 10639 (-)
Type: TC
Location: 10085 - 10639 (-)
Gene ID: HRGMv2_1802_86_13
Type: TC
Location: 10608 - 11183 (-)
Type: TC
Location: 10608 - 11183 (-)
Gene ID: HRGMv2_1802_86_14
Type: pfam
Location: 11180 - 11746 (-)
Type: pfam
Location: 11180 - 11746 (-)
Gene ID: HRGMv2_1802_86_15
Type: STP
Location: 11767 - 12753 (-)
Type: STP
Location: 11767 - 12753 (-)
Gene ID: HRGMv2_1802_86_16
Type: TC
Location: 12767 - 13744 (-)
Type: TC
Location: 12767 - 13744 (-)
Gene ID: HRGMv2_1802_86_17
Type: TC
Location: 13959 - 14759 (+)
Type: TC
Location: 13959 - 14759 (+)
Gene ID: HRGMv2_1802_86_18
Type: TC
Location: 14779 - 15561 (+)
Type: TC
Location: 14779 - 15561 (+)
Gene ID: HRGMv2_1802_86_19
Type: TC
Location: 15566 - 16123 (+)
Type: TC
Location: 15566 - 16123 (+)
Gene ID: HRGMv2_1802_86_20
Type: TC
Location: 16142 - 16777 (+)
Type: TC
Location: 16142 - 16777 (+)
Gene ID: HRGMv2_1802_86_21
Type: TC
Location: 16777 - 17070 (+)
Type: TC
Location: 16777 - 17070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter meridianamericanus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.