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Cluster: HRGMv2_1802_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1802_84 HRGMv2_1802_84_6 6650 7855 - 2.A.27.1.1
TC HRGMv2_1802_84 HRGMv2_1802_84_7 8081 9472 + 2.A.40.4.2
pfam HRGMv2_1802_84 HRGMv2_1802_84_8 9594 11270 + AsmA
TC HRGMv2_1802_84 HRGMv2_1802_84_9 11534 13105 + 4.A.1.1.8
CAZyme HRGMv2_1802_84 HRGMv2_1802_84_10 13120 14499 + GH4
TF HRGMv2_1802_84 HRGMv2_1802_84_11 14506 15246 - HTH_6
TC HRGMv2_1802_84 HRGMv2_1802_84_12 15334 16533 + 2.A.1.7.11
CAZyme HRGMv2_1802_84 HRGMv2_1802_84_13 16530 18848 - GH31_3
TC HRGMv2_1802_84 HRGMv2_1802_84_14 18859 20241 - 2.A.2.3.4
Gene ID: HRGMv2_1802_84_6
Type: TC
Location: 6650 - 7855 (-)
Gene ID: HRGMv2_1802_84_7
Type: TC
Location: 8081 - 9472 (+)
Gene ID: HRGMv2_1802_84_8
Type: pfam
Location: 9594 - 11270 (+)
Gene ID: HRGMv2_1802_84_9
Type: TC
Location: 11534 - 13105 (+)
Gene ID: HRGMv2_1802_84_10
Type: CAZyme
Location: 13120 - 14499 (+)
Gene ID: HRGMv2_1802_84_11
Type: TF
Location: 14506 - 15246 (-)
Gene ID: HRGMv2_1802_84_12
Type: TC
Location: 15334 - 16533 (+)
Gene ID: HRGMv2_1802_84_13
Type: CAZyme
Location: 16530 - 18848 (-)
Gene ID: HRGMv2_1802_84_14
Type: TC
Location: 18859 - 20241 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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