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Cluster: HRGMv2_1802_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1802_83 HRGMv2_1802_83_4 2558 4993 + 1.B.11.5.1
NULL(UNKNOWN) HRGMv2_1802_83 HRGMv2_1802_83_5 4990 5550 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1802_83 HRGMv2_1802_83_6 5598 6368 - 3.A.1.105.17
TC HRGMv2_1802_83 HRGMv2_1802_83_7 6365 7291 - 3.A.1.105.17
TC HRGMv2_1802_83 HRGMv2_1802_83_8 7340 8089 + 2.A.53.3.8
STP HRGMv2_1802_83 HRGMv2_1802_83_9 8158 8694 - Pribosyltran
pfam HRGMv2_1802_83 HRGMv2_1802_83_10 8886 11288 + PQQ | PQQ | PQQ | PQQ | PQQ | PQQ | PQQ_2
CAZyme HRGMv2_1802_83 HRGMv2_1802_83_11 11375 12994 - AA1
TC HRGMv2_1802_83 HRGMv2_1802_83_12 13073 13495 + 8.A.2.1.3
Gene ID: HRGMv2_1802_83_4
Type: TC
Location: 2558 - 4993 (+)
Gene ID: HRGMv2_1802_83_5
Type:
Location: 4990 - 5550 (+)
Gene ID: HRGMv2_1802_83_6
Type: TC
Location: 5598 - 6368 (-)
Gene ID: HRGMv2_1802_83_7
Type: TC
Location: 6365 - 7291 (-)
Gene ID: HRGMv2_1802_83_8
Type: TC
Location: 7340 - 8089 (+)
Gene ID: HRGMv2_1802_83_9
Type: STP
Location: 8158 - 8694 (-)
Gene ID: HRGMv2_1802_83_10
Type: pfam
Location: 8886 - 11288 (+)
Gene ID: HRGMv2_1802_83_11
Type: CAZyme
Location: 11375 - 12994 (-)
Gene ID: HRGMv2_1802_83_12
Type: TC
Location: 13073 - 13495 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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