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Cluster: HRGMv2_1802_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1802_64 HRGMv2_1802_64_8 9255 11435 + AA2
pfam HRGMv2_1802_64 HRGMv2_1802_64_9 11520 12623 - Fe-ADH | Fe-ADH_2
pfam HRGMv2_1802_64 HRGMv2_1802_64_10 12636 13298 - TAL_FSA
TC HRGMv2_1802_64 HRGMv2_1802_64_11 13314 15815 - 4.A.2.1.10
TC HRGMv2_1802_64 HRGMv2_1802_64_12 16123 17202 + 4.A.2.1.10
TC HRGMv2_1802_64 HRGMv2_1802_64_13 17217 17537 + 4.A.2.1.10
pfam HRGMv2_1802_64 HRGMv2_1802_64_14 17649 19946 + Gly_radical | PFL-like
pfam HRGMv2_1802_64 HRGMv2_1802_64_15 19912 20790 + Radical_SAM | Fer4_12
TC HRGMv2_1802_64 HRGMv2_1802_64_16 20792 21148 + 4.A.2.1.10
Gene ID: HRGMv2_1802_64_8
Type: CAZyme
Location: 9255 - 11435 (+)
Gene ID: HRGMv2_1802_64_9
Type: pfam
Location: 11520 - 12623 (-)
Gene ID: HRGMv2_1802_64_10
Type: pfam
Location: 12636 - 13298 (-)
Gene ID: HRGMv2_1802_64_11
Type: TC
Location: 13314 - 15815 (-)
Gene ID: HRGMv2_1802_64_12
Type: TC
Location: 16123 - 17202 (+)
Gene ID: HRGMv2_1802_64_13
Type: TC
Location: 17217 - 17537 (+)
Gene ID: HRGMv2_1802_64_14
Type: pfam
Location: 17649 - 19946 (+)
Gene ID: HRGMv2_1802_64_15
Type: pfam
Location: 19912 - 20790 (+)
Gene ID: HRGMv2_1802_64_16
Type: TC
Location: 20792 - 21148 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1802_64_9 vegetarian > omnivore 1.31368 0.04467

🧭 Explore Read Mapping of CGC

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