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Cluster: HRGMv2_1802_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_21 18127 19173 + GT9
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_22 19177 20145 + GT9
TC HRGMv2_1802_56 HRGMv2_1802_56_23 20162 21445 + 9.B.67.5.1
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_24 21438 22451 + GT2
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_25 22453 23508 + GT9
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_26 23509 24453 + GT8
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_27 24478 25470 - GT8
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_28 25515 26534 - GT8
pfam HRGMv2_1802_56 HRGMv2_1802_56_29 26565 27362 - Kdo
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_30 27355 28479 - GT4
CAZyme HRGMv2_1802_56 HRGMv2_1802_56_31 28904 30181 + GT30
Gene ID: HRGMv2_1802_56_21
Type: CAZyme
Location: 18127 - 19173 (+)
Gene ID: HRGMv2_1802_56_22
Type: CAZyme
Location: 19177 - 20145 (+)
Gene ID: HRGMv2_1802_56_23
Type: TC
Location: 20162 - 21445 (+)
Gene ID: HRGMv2_1802_56_24
Type: CAZyme
Location: 21438 - 22451 (+)
Gene ID: HRGMv2_1802_56_25
Type: CAZyme
Location: 22453 - 23508 (+)
Gene ID: HRGMv2_1802_56_26
Type: CAZyme
Location: 23509 - 24453 (+)
Gene ID: HRGMv2_1802_56_27
Type: CAZyme
Location: 24478 - 25470 (-)
Gene ID: HRGMv2_1802_56_28
Type: CAZyme
Location: 25515 - 26534 (-)
Gene ID: HRGMv2_1802_56_29
Type: pfam
Location: 26565 - 27362 (-)
Gene ID: HRGMv2_1802_56_30
Type: CAZyme
Location: 27355 - 28479 (-)
Gene ID: HRGMv2_1802_56_31
Type: CAZyme
Location: 28904 - 30181 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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