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Cluster: HRGMv2_1802_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1802_49 HRGMv2_1802_49_14 13340 13648 + 4.A.3.2.3
TC HRGMv2_1802_49 HRGMv2_1802_49_15 13748 15067 + 4.A.3.2.7
TC HRGMv2_1802_49 HRGMv2_1802_49_16 15103 15414 + 4.A.3.2.9
TC HRGMv2_1802_49 HRGMv2_1802_49_17 15475 17148 + 1.B.3.1.3
CAZyme HRGMv2_1802_49 HRGMv2_1802_49_18 17172 18611 + GH1
pfam HRGMv2_1802_49 HRGMv2_1802_49_19 18634 19677 - DUF1176
STP HRGMv2_1802_49 HRGMv2_1802_49_20 19800 20375 - NUDIX
TC HRGMv2_1802_49 HRGMv2_1802_49_21 20443 22422 - 5.A.3.11.1
STP HRGMv2_1802_49 HRGMv2_1802_49_22 22687 24384 + HATPase_c
TC HRGMv2_1802_49 HRGMv2_1802_49_23 24557 27670 + 2.A.6.2.7
Gene ID: HRGMv2_1802_49_14
Type: TC
Location: 13340 - 13648 (+)
Gene ID: HRGMv2_1802_49_15
Type: TC
Location: 13748 - 15067 (+)
Gene ID: HRGMv2_1802_49_16
Type: TC
Location: 15103 - 15414 (+)
Gene ID: HRGMv2_1802_49_17
Type: TC
Location: 15475 - 17148 (+)
Gene ID: HRGMv2_1802_49_18
Type: CAZyme
Location: 17172 - 18611 (+)
Gene ID: HRGMv2_1802_49_19
Type: pfam
Location: 18634 - 19677 (-)
Gene ID: HRGMv2_1802_49_20
Type: STP
Location: 19800 - 20375 (-)
Gene ID: HRGMv2_1802_49_21
Type: TC
Location: 20443 - 22422 (-)
Gene ID: HRGMv2_1802_49_22
Type: STP
Location: 22687 - 24384 (+)
Gene ID: HRGMv2_1802_49_23
Type: TC
Location: 24557 - 27670 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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