Cluster: HRGMv2_1802_CGC36
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1802
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_22 | 21595 | 22962 | + | 1.B.17.3.10 |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_23 | 22987 | 23559 | - | 9.B.27.2.7 |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_24 | 23724 | 24311 | + | 9.B.29.3.1 |
| peptidase | HRGMv2_1802_32 | HRGMv2_1802_32_25 | 24492 | 25439 | + | S11.UPW |
| pfam | HRGMv2_1802_32 | HRGMv2_1802_32_26 | 25539 | 27248 | - | FAD_binding_4 | Lact-deh-memb |
| CAZyme | HRGMv2_1802_32 | HRGMv2_1802_32_27 | 27481 | 29778 | + | GH3 |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_28 | 30004 | 30921 | + | 3.A.1.12.15 |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_29 | 30937 | 32103 | + | 3.A.1.12.15 |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_30 | 32096 | 33043 | + | 3.A.1.12.15 |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_31 | 33027 | 33758 | + | 3.A.1.12.15 |
| NULL(UNKNOWN) | HRGMv2_1802_32 | HRGMv2_1802_32_32 | 33739 | 33846 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1802_32 | HRGMv2_1802_32_33 | 33921 | 34652 | - | MerR |
| TC | HRGMv2_1802_32 | HRGMv2_1802_32_34 | 34878 | 36563 | + | 9.B.33.1.1 |
Gene ID: HRGMv2_1802_32_22
Type: TC
Location: 21595 - 22962 (+)
Type: TC
Location: 21595 - 22962 (+)
Gene ID: HRGMv2_1802_32_23
Type: TC
Location: 22987 - 23559 (-)
Type: TC
Location: 22987 - 23559 (-)
Gene ID: HRGMv2_1802_32_24
Type: TC
Location: 23724 - 24311 (+)
Type: TC
Location: 23724 - 24311 (+)
Gene ID: HRGMv2_1802_32_25
Type: peptidase
Location: 24492 - 25439 (+)
Type: peptidase
Location: 24492 - 25439 (+)
Gene ID: HRGMv2_1802_32_26
Type: pfam
Location: 25539 - 27248 (-)
Type: pfam
Location: 25539 - 27248 (-)
Gene ID: HRGMv2_1802_32_27
Type: CAZyme
Location: 27481 - 29778 (+)
Type: CAZyme
Location: 27481 - 29778 (+)
Gene ID: HRGMv2_1802_32_28
Type: TC
Location: 30004 - 30921 (+)
Type: TC
Location: 30004 - 30921 (+)
Gene ID: HRGMv2_1802_32_29
Type: TC
Location: 30937 - 32103 (+)
Type: TC
Location: 30937 - 32103 (+)
Gene ID: HRGMv2_1802_32_30
Type: TC
Location: 32096 - 33043 (+)
Type: TC
Location: 32096 - 33043 (+)
Gene ID: HRGMv2_1802_32_31
Type: TC
Location: 33027 - 33758 (+)
Type: TC
Location: 33027 - 33758 (+)
Gene ID: HRGMv2_1802_32_32
Type:
Location: 33739 - 33846 (-)
Type:
Location: 33739 - 33846 (-)
Gene ID: HRGMv2_1802_32_33
Type: TF
Location: 33921 - 34652 (-)
Type: TF
Location: 33921 - 34652 (-)
Gene ID: HRGMv2_1802_32_34
Type: TC
Location: 34878 - 36563 (+)
Type: TC
Location: 34878 - 36563 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter meridianamericanus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.