Cluster: HRGMv2_1802_CGC34
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1802
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1802_29 | HRGMv2_1802_29_40 | 37669 | 38928 | - | 2.A.1.5.3 |
| STP | HRGMv2_1802_29 | HRGMv2_1802_29_41 | 38993 | 39940 | - | PfkB |
| CAZyme | HRGMv2_1802_29 | HRGMv2_1802_29_42 | 39971 | 41407 | - | GH32 |
| TF | HRGMv2_1802_29 | HRGMv2_1802_29_43 | 41581 | 42576 | + | LacI |
| pfam | HRGMv2_1802_29 | HRGMv2_1802_29_44 | 43093 | 43947 | + | Amidohydro_2 |
| TC | HRGMv2_1802_29 | HRGMv2_1802_29_45 | 43961 | 45337 | + | 4.A.5.1.4 |
Gene ID: HRGMv2_1802_29_40
Type: TC
Location: 37669 - 38928 (-)
Type: TC
Location: 37669 - 38928 (-)
Gene ID: HRGMv2_1802_29_41
Type: STP
Location: 38993 - 39940 (-)
Type: STP
Location: 38993 - 39940 (-)
Gene ID: HRGMv2_1802_29_42
Type: CAZyme
Location: 39971 - 41407 (-)
Type: CAZyme
Location: 39971 - 41407 (-)
Gene ID: HRGMv2_1802_29_43
Type: TF
Location: 41581 - 42576 (+)
Type: TF
Location: 41581 - 42576 (+)
Gene ID: HRGMv2_1802_29_44
Type: pfam
Location: 43093 - 43947 (+)
Type: pfam
Location: 43093 - 43947 (+)
Gene ID: HRGMv2_1802_29_45
Type: TC
Location: 43961 - 45337 (+)
Type: TC
Location: 43961 - 45337 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter meridianamericanus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.