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Cluster: HRGMv2_1802_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1802_1 HRGMv2_1802_1_74 83177 84220 + 9.B.146.1.2
pfam HRGMv2_1802_1 HRGMv2_1802_1_75 84213 84773 + PglD_N
TC HRGMv2_1802_1 HRGMv2_1802_1_76 84812 86698 + 9.B.18.2.1
CAZyme HRGMv2_1802_1 HRGMv2_1802_1_77 87333 88085 + GT2
pfam HRGMv2_1802_1 HRGMv2_1802_1_78 88322 89575 + Polysacc_synt
TC HRGMv2_1802_1 HRGMv2_1802_1_79 89565 90938 + 9.B.67.3.7
CAZyme HRGMv2_1802_1 HRGMv2_1802_1_80 90919 91776 + GT2
CAZyme HRGMv2_1802_1 HRGMv2_1802_1_81 91776 92807 + GT4
CAZyme HRGMv2_1802_1 HRGMv2_1802_1_82 92797 93933 + GT4
Gene ID: HRGMv2_1802_1_74
Type: TC
Location: 83177 - 84220 (+)
Gene ID: HRGMv2_1802_1_75
Type: pfam
Location: 84213 - 84773 (+)
Gene ID: HRGMv2_1802_1_76
Type: TC
Location: 84812 - 86698 (+)
Gene ID: HRGMv2_1802_1_77
Type: CAZyme
Location: 87333 - 88085 (+)
Gene ID: HRGMv2_1802_1_78
Type: pfam
Location: 88322 - 89575 (+)
Gene ID: HRGMv2_1802_1_79
Type: TC
Location: 89565 - 90938 (+)
Gene ID: HRGMv2_1802_1_80
Type: CAZyme
Location: 90919 - 91776 (+)
Gene ID: HRGMv2_1802_1_81
Type: CAZyme
Location: 91776 - 92807 (+)
Gene ID: HRGMv2_1802_1_82
Type: CAZyme
Location: 92797 - 93933 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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