Cluster: HRGMv2_1802_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1802
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1802_23 | HRGMv2_1802_23_37 | 37349 | 38782 | - | GH1 |
| TF | HRGMv2_1802_23 | HRGMv2_1802_23_38 | 38902 | 39636 | - | HTH_6 |
| pfam | HRGMv2_1802_23 | HRGMv2_1802_23_39 | 39683 | 39994 | + | ASCH |
| TC | HRGMv2_1802_23 | HRGMv2_1802_23_40 | 40157 | 40816 | + | 1.C.113.1.10 |
Gene ID: HRGMv2_1802_23_37
Type: CAZyme
Location: 37349 - 38782 (-)
Type: CAZyme
Location: 37349 - 38782 (-)
Gene ID: HRGMv2_1802_23_38
Type: TF
Location: 38902 - 39636 (-)
Type: TF
Location: 38902 - 39636 (-)
Gene ID: HRGMv2_1802_23_39
Type: pfam
Location: 39683 - 39994 (+)
Type: pfam
Location: 39683 - 39994 (+)
Gene ID: HRGMv2_1802_23_40
Type: TC
Location: 40157 - 40816 (+)
Type: TC
Location: 40157 - 40816 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter meridianamericanus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1802_23_37 | vegan > omnivore | 2.59475 | 0.00364 |
| HRGMv2_1802_23_37 | vegetarian > omnivore | 2.46747 | 0.00124 |
| HRGMv2_1802_23_38 | vegetarian > omnivore | 1.50491 | 0.04576 |