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Cluster: HRGMv2_1802_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1802_15 HRGMv2_1802_15_56 52518 54005 + GH13_5
pfam HRGMv2_1802_15 HRGMv2_1802_15_57 54046 54459 - YedD
TC HRGMv2_1802_15 HRGMv2_1802_15_58 54645 55850 + 9.B.102.1.1
pfam HRGMv2_1802_15 HRGMv2_1802_15_59 55847 56080 + TusA
pfam HRGMv2_1802_15 HRGMv2_1802_15_60 56136 56450 - FliE
TC HRGMv2_1802_15 HRGMv2_1802_15_61 56667 58349 + 3.A.6.2.1
pfam HRGMv2_1802_15 HRGMv2_1802_15_62 58342 59340 + FliG_C | FliG_M | FliG_N
TC HRGMv2_1802_15 HRGMv2_1802_15_63 59333 60040 + 3.A.6.2.1
TC HRGMv2_1802_15 HRGMv2_1802_15_64 60040 61410 + 3.A.6.2.1
Gene ID: HRGMv2_1802_15_56
Type: CAZyme
Location: 52518 - 54005 (+)
Gene ID: HRGMv2_1802_15_57
Type: pfam
Location: 54046 - 54459 (-)
Gene ID: HRGMv2_1802_15_58
Type: TC
Location: 54645 - 55850 (+)
Gene ID: HRGMv2_1802_15_59
Type: pfam
Location: 55847 - 56080 (+)
Gene ID: HRGMv2_1802_15_60
Type: pfam
Location: 56136 - 56450 (-)
Gene ID: HRGMv2_1802_15_61
Type: TC
Location: 56667 - 58349 (+)
Gene ID: HRGMv2_1802_15_62
Type: pfam
Location: 58342 - 59340 (+)
Gene ID: HRGMv2_1802_15_63
Type: TC
Location: 59333 - 60040 (+)
Gene ID: HRGMv2_1802_15_64
Type: TC
Location: 60040 - 61410 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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