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Cluster: HRGMv2_1802_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1802_13 HRGMv2_1802_13_28 28976 30304 + 2.A.1.4.4
TC HRGMv2_1802_13 HRGMv2_1802_13_29 30447 31613 + 2.A.1.4.1
pfam HRGMv2_1802_13 HRGMv2_1802_13_30 31739 32191 + DUF1198
TC HRGMv2_1802_13 HRGMv2_1802_13_31 32365 33558 + 2.A.1.2.26
CAZyme HRGMv2_1802_13 HRGMv2_1802_13_32 33604 34986 - GH1
NULL(UNKNOWN) HRGMv2_1802_13 HRGMv2_1802_13_33 35079 35372 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1802_13 HRGMv2_1802_13_34 35503 35919 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC HRGMv2_1802_13 HRGMv2_1802_13_35 36010 38808 + 3.A.23.1.1
TC HRGMv2_1802_13 HRGMv2_1802_13_36 38929 39354 + 4.A.6.1.17
TC HRGMv2_1802_13 HRGMv2_1802_13_37 39367 39852 + 4.A.6.1.17
TC HRGMv2_1802_13 HRGMv2_1802_13_38 39878 40627 + 4.A.6.1.17
TC HRGMv2_1802_13 HRGMv2_1802_13_39 40627 41484 + 4.A.6.1.17
pfam HRGMv2_1802_13 HRGMv2_1802_13_40 41488 42597 + SelA
pfam HRGMv2_1802_13 HRGMv2_1802_13_41 42584 43327 + KDGP_aldolase
TC HRGMv2_1802_13 HRGMv2_1802_13_42 43516 44334 + 3.A.1.24.1
TC HRGMv2_1802_13 HRGMv2_1802_13_43 44363 45265 - 2.A.7.3.12
Gene ID: HRGMv2_1802_13_28
Type: TC
Location: 28976 - 30304 (+)
Gene ID: HRGMv2_1802_13_29
Type: TC
Location: 30447 - 31613 (+)
Gene ID: HRGMv2_1802_13_30
Type: pfam
Location: 31739 - 32191 (+)
Gene ID: HRGMv2_1802_13_31
Type: TC
Location: 32365 - 33558 (+)
Gene ID: HRGMv2_1802_13_32
Type: CAZyme
Location: 33604 - 34986 (-)
Gene ID: HRGMv2_1802_13_33
Type:
Location: 35079 - 35372 (-)
Gene ID: HRGMv2_1802_13_34
Type: pfam
Location: 35503 - 35919 (+)
Gene ID: HRGMv2_1802_13_35
Type: TC
Location: 36010 - 38808 (+)
Gene ID: HRGMv2_1802_13_36
Type: TC
Location: 38929 - 39354 (+)
Gene ID: HRGMv2_1802_13_37
Type: TC
Location: 39367 - 39852 (+)
Gene ID: HRGMv2_1802_13_38
Type: TC
Location: 39878 - 40627 (+)
Gene ID: HRGMv2_1802_13_39
Type: TC
Location: 40627 - 41484 (+)
Gene ID: HRGMv2_1802_13_40
Type: pfam
Location: 41488 - 42597 (+)
Gene ID: HRGMv2_1802_13_41
Type: pfam
Location: 42584 - 43327 (+)
Gene ID: HRGMv2_1802_13_42
Type: TC
Location: 43516 - 44334 (+)
Gene ID: HRGMv2_1802_13_43
Type: TC
Location: 44363 - 45265 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1802_13_39 vegan > omnivore 1.40476 0.04210
HRGMv2_1802_13_42 vegetarian > omnivore 1.53622 0.04467
HRGMv2_1802_13_42 vegetarian > vegan 1.42263 0.01327

🧭 Explore Read Mapping of CGC

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