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Cluster: HRGMv2_1802_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1802_13 HRGMv2_1802_13_2 547 2208 + 2.A.81.1.5
TF HRGMv2_1802_13 HRGMv2_1802_13_3 2211 2927 - GntR
TC HRGMv2_1802_13 HRGMv2_1802_13_4 3023 4771 + 4.A.1.1.10
CAZyme HRGMv2_1802_13 HRGMv2_1802_13_5 4768 6090 + GH4
TF HRGMv2_1802_13 HRGMv2_1802_13_6 6087 6980 - HTH_AraC | HTH_AraC
TC HRGMv2_1802_13 HRGMv2_1802_13_7 7147 8862 + 2.A.21.3.21
sulfatase HRGMv2_1802_13 HRGMv2_1802_13_8 8859 10352 + S1_43
TC HRGMv2_1802_13 HRGMv2_1802_13_9 10452 10799 + 9.B.51.1.1
Gene ID: HRGMv2_1802_13_2
Type: TC
Location: 547 - 2208 (+)
Gene ID: HRGMv2_1802_13_3
Type: TF
Location: 2211 - 2927 (-)
Gene ID: HRGMv2_1802_13_4
Type: TC
Location: 3023 - 4771 (+)
Gene ID: HRGMv2_1802_13_5
Type: CAZyme
Location: 4768 - 6090 (+)
Gene ID: HRGMv2_1802_13_6
Type: TF
Location: 6087 - 6980 (-)
Gene ID: HRGMv2_1802_13_7
Type: TC
Location: 7147 - 8862 (+)
Gene ID: HRGMv2_1802_13_8
Type: sulfatase
Location: 8859 - 10352 (+)
Gene ID: HRGMv2_1802_13_9
Type: TC
Location: 10452 - 10799 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1802_13_5 vegan > omnivore 1.27860 0.00440

🧭 Explore Read Mapping of CGC

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