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Cluster: HRGMv2_1794_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1794_11 HRGMv2_1794_11_540 584948 585556 + 3.D.1.9.2
TC HRGMv2_1794_11 HRGMv2_1794_11_541 585553 587379 + 3.D.1.9.2
TC HRGMv2_1794_11 HRGMv2_1794_11_542 587382 588305 + 3.D.1.9.2
TC HRGMv2_1794_11 HRGMv2_1794_11_543 588322 590031 + 3.D.1.9.2
TC HRGMv2_1794_11 HRGMv2_1794_11_544 590041 590583 + 3.D.1.9.2
TC HRGMv2_1794_11 HRGMv2_1794_11_545 590583 591350 + 3.D.1.9.2
pfam HRGMv2_1794_11 HRGMv2_1794_11_546 591347 591757 + HycH
peptidase HRGMv2_1794_11 HRGMv2_1794_11_547 591750 592241 + A31.003
CAZyme HRGMv2_1794_11 HRGMv2_1794_11_548 592692 594116 - GH1
TC HRGMv2_1794_11 HRGMv2_1794_11_549 594143 595579 - 4.A.1.2.3
TF HRGMv2_1794_11 HRGMv2_1794_11_550 595847 596860 + LacI
TC HRGMv2_1794_11 HRGMv2_1794_11_551 596995 597522 + 5.A.3.11.1
pfam HRGMv2_1794_11 HRGMv2_1794_11_552 597531 599759 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC HRGMv2_1794_11 HRGMv2_1794_11_553 599761 600774 + 2.A.52.1.1
Gene ID: HRGMv2_1794_11_540
Type: TC
Location: 584948 - 585556 (+)
Gene ID: HRGMv2_1794_11_541
Type: TC
Location: 585553 - 587379 (+)
Gene ID: HRGMv2_1794_11_542
Type: TC
Location: 587382 - 588305 (+)
Gene ID: HRGMv2_1794_11_543
Type: TC
Location: 588322 - 590031 (+)
Gene ID: HRGMv2_1794_11_544
Type: TC
Location: 590041 - 590583 (+)
Gene ID: HRGMv2_1794_11_545
Type: TC
Location: 590583 - 591350 (+)
Gene ID: HRGMv2_1794_11_546
Type: pfam
Location: 591347 - 591757 (+)
Gene ID: HRGMv2_1794_11_547
Type: peptidase
Location: 591750 - 592241 (+)
Gene ID: HRGMv2_1794_11_548
Type: CAZyme
Location: 592692 - 594116 (-)
Gene ID: HRGMv2_1794_11_549
Type: TC
Location: 594143 - 595579 (-)
Gene ID: HRGMv2_1794_11_550
Type: TF
Location: 595847 - 596860 (+)
Gene ID: HRGMv2_1794_11_551
Type: TC
Location: 596995 - 597522 (+)
Gene ID: HRGMv2_1794_11_552
Type: pfam
Location: 597531 - 599759 (+)
Gene ID: HRGMv2_1794_11_553
Type: TC
Location: 599761 - 600774 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1794_11_546 vegetarian > vegan 1.01354 0.02592

🧭 Explore Read Mapping of CGC

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