Cluster: HRGMv2_1794_CGC55
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1794
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1794_11 | HRGMv2_1794_11_329 | 354042 | 356051 | - | 5.A.1.5.1 |
| NULL(UNKNOWN) | HRGMv2_1794_11 | HRGMv2_1794_11_330 | 356101 | 356460 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1794_11 | HRGMv2_1794_11_331 | 356585 | 358018 | - | GH1 |
| TF | HRGMv2_1794_11 | HRGMv2_1794_11_332 | 358132 | 358893 | - | HTH_6 |
| pfam | HRGMv2_1794_11 | HRGMv2_1794_11_333 | 358917 | 359228 | + | ASCH |
| TC | HRGMv2_1794_11 | HRGMv2_1794_11_334 | 359393 | 360052 | + | 1.C.113.1.10 |
Gene ID: HRGMv2_1794_11_329
Type: TC
Location: 354042 - 356051 (-)
Type: TC
Location: 354042 - 356051 (-)
Gene ID: HRGMv2_1794_11_330
Type:
Location: 356101 - 356460 (-)
Type:
Location: 356101 - 356460 (-)
Gene ID: HRGMv2_1794_11_331
Type: CAZyme
Location: 356585 - 358018 (-)
Type: CAZyme
Location: 356585 - 358018 (-)
Gene ID: HRGMv2_1794_11_332
Type: TF
Location: 358132 - 358893 (-)
Type: TF
Location: 358132 - 358893 (-)
Gene ID: HRGMv2_1794_11_333
Type: pfam
Location: 358917 - 359228 (+)
Type: pfam
Location: 358917 - 359228 (+)
Gene ID: HRGMv2_1794_11_334
Type: TC
Location: 359393 - 360052 (+)
Type: TC
Location: 359393 - 360052 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella aerogenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1794_11_329 | vegetarian > vegan | 1.81028 | 0.03242 |
| HRGMv2_1794_11_330 | vegetarian > omnivore | 2.70731 | 0.04061 |
| HRGMv2_1794_11_330 | vegetarian > vegan | 3.03801 | 0.02017 |
| HRGMv2_1794_11_332 | vegetarian > omnivore | 1.40740 | 0.04061 |
| HRGMv2_1794_11_332 | vegetarian > vegan | 1.63450 | 0.03242 |