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Cluster: HRGMv2_1794_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1794_11 HRGMv2_1794_11_15 19272 19997 + GT51
TC HRGMv2_1794_11 HRGMv2_1794_11_16 20020 20292 - 8.A.8.1.5
pfam HRGMv2_1794_11 HRGMv2_1794_11_17 20289 21143 - RapZ-like_N | PapZ_C
TC HRGMv2_1794_11 HRGMv2_1794_11_18 21189 21677 - 4.A.2.1.7
pfam HRGMv2_1794_11 HRGMv2_1794_11_19 21736 22023 - Ribosomal_S30AE
pfam HRGMv2_1794_11 HRGMv2_1794_11_20 22046 23479 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC HRGMv2_1794_11 HRGMv2_1794_11_21 23527 24252 - 1.B.42.1.2
TC HRGMv2_1794_11 HRGMv2_1794_11_22 24259 24804 - 1.B.42.1.2
TC HRGMv2_1794_11 HRGMv2_1794_11_23 24773 25348 - 1.B.42.1.2
pfam HRGMv2_1794_11 HRGMv2_1794_11_24 25345 25911 - Hydrolase_3
STP HRGMv2_1794_11 HRGMv2_1794_11_25 25926 26930 - CBS | CBS | SIS
TC HRGMv2_1794_11 HRGMv2_1794_11_26 26927 27904 - 2.A.19.5.1
TC HRGMv2_1794_11 HRGMv2_1794_11_27 28111 28923 + 3.A.1.27.3
TC HRGMv2_1794_11 HRGMv2_1794_11_28 28931 29713 + 3.A.1.27.3
TC HRGMv2_1794_11 HRGMv2_1794_11_29 29718 30269 + 3.A.1.27.3
TC HRGMv2_1794_11 HRGMv2_1794_11_30 30288 30923 + 3.A.1.27.3
TC HRGMv2_1794_11 HRGMv2_1794_11_31 30923 31213 + 3.A.1.27.3
Gene ID: HRGMv2_1794_11_15
Type: CAZyme
Location: 19272 - 19997 (+)
Gene ID: HRGMv2_1794_11_16
Type: TC
Location: 20020 - 20292 (-)
Gene ID: HRGMv2_1794_11_17
Type: pfam
Location: 20289 - 21143 (-)
Gene ID: HRGMv2_1794_11_18
Type: TC
Location: 21189 - 21677 (-)
Gene ID: HRGMv2_1794_11_19
Type: pfam
Location: 21736 - 22023 (-)
Gene ID: HRGMv2_1794_11_20
Type: pfam
Location: 22046 - 23479 (-)
Gene ID: HRGMv2_1794_11_21
Type: TC
Location: 23527 - 24252 (-)
Gene ID: HRGMv2_1794_11_22
Type: TC
Location: 24259 - 24804 (-)
Gene ID: HRGMv2_1794_11_23
Type: TC
Location: 24773 - 25348 (-)
Gene ID: HRGMv2_1794_11_24
Type: pfam
Location: 25345 - 25911 (-)
Gene ID: HRGMv2_1794_11_25
Type: STP
Location: 25926 - 26930 (-)
Gene ID: HRGMv2_1794_11_26
Type: TC
Location: 26927 - 27904 (-)
Gene ID: HRGMv2_1794_11_27
Type: TC
Location: 28111 - 28923 (+)
Gene ID: HRGMv2_1794_11_28
Type: TC
Location: 28931 - 29713 (+)
Gene ID: HRGMv2_1794_11_29
Type: TC
Location: 29718 - 30269 (+)
Gene ID: HRGMv2_1794_11_30
Type: TC
Location: 30288 - 30923 (+)
Gene ID: HRGMv2_1794_11_31
Type: TC
Location: 30923 - 31213 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1794_11_25 vegetarian > vegan 1.69277 0.03242
HRGMv2_1794_11_30 vegetarian > vegan 1.02811 0.03242

🧭 Explore Read Mapping of CGC

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