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Cluster: HRGMv2_1794_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1794_10 HRGMv2_1794_10_60 67320 69710 - GH20
TC HRGMv2_1794_10 HRGMv2_1794_10_61 69869 72577 - 3.A.3.4.1
TF HRGMv2_1794_10 HRGMv2_1794_10_62 72959 73906 + LacI
TC HRGMv2_1794_10 HRGMv2_1794_10_63 74037 75455 + 4.A.1.2.4
CAZyme HRGMv2_1794_10 HRGMv2_1794_10_64 75507 77162 + GH13_29
TC HRGMv2_1794_10 HRGMv2_1794_10_65 77219 78571 - 4.A.3.2.2
CAZyme HRGMv2_1794_10 HRGMv2_1794_10_66 78597 79904 - GH4
TC HRGMv2_1794_10 HRGMv2_1794_10_67 79994 80302 - 4.A.3.2.9
Gene ID: HRGMv2_1794_10_60
Type: CAZyme
Location: 67320 - 69710 (-)
Gene ID: HRGMv2_1794_10_61
Type: TC
Location: 69869 - 72577 (-)
Gene ID: HRGMv2_1794_10_62
Type: TF
Location: 72959 - 73906 (+)
Gene ID: HRGMv2_1794_10_63
Type: TC
Location: 74037 - 75455 (+)
Gene ID: HRGMv2_1794_10_64
Type: CAZyme
Location: 75507 - 77162 (+)
Gene ID: HRGMv2_1794_10_65
Type: TC
Location: 77219 - 78571 (-)
Gene ID: HRGMv2_1794_10_66
Type: CAZyme
Location: 78597 - 79904 (-)
Gene ID: HRGMv2_1794_10_67
Type: TC
Location: 79994 - 80302 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1794_10_62 vegetarian > vegan 1.05827 0.03242

🧭 Explore Read Mapping of CGC

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