Cluster: HRGMv2_1794_CGC30
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1794
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1794_9 | HRGMv2_1794_9_921 | 973076 | 973744 | - | 9.B.100.1.1 |
| TF | HRGMv2_1794_9 | HRGMv2_1794_9_922 | 973912 | 974883 | + | HTH_8 |
| TC | HRGMv2_1794_9 | HRGMv2_1794_9_923 | 974874 | 976265 | - | 2.A.1.3.23 |
| peptidase | HRGMv2_1794_9 | HRGMv2_1794_9_924 | 976291 | 977460 | - | M20.UPD |
| CAZyme | HRGMv2_1794_9 | HRGMv2_1794_9_925 | 977632 | 979929 | + | GH39 |
| NULL(UNKNOWN) | HRGMv2_1794_9 | HRGMv2_1794_9_926 | 980054 | 980338 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1794_9 | HRGMv2_1794_9_927 | 980576 | 982222 | + | 3.A.1.5.5 |
| TC | HRGMv2_1794_9 | HRGMv2_1794_9_928 | 982219 | 983184 | + | 3.A.1.5.5 |
| pfam | HRGMv2_1794_9 | HRGMv2_1794_9_929 | 983386 | 983799 | + | SRAP |
| TF | HRGMv2_1794_9 | HRGMv2_1794_9_930 | 985061 | 985279 | - | CSD |
| CAZyme | HRGMv2_1794_9 | HRGMv2_1794_9_931 | 986174 | 994756 | + | GH94 | GT84 |
Gene ID: HRGMv2_1794_9_921
Type: TC
Location: 973076 - 973744 (-)
Type: TC
Location: 973076 - 973744 (-)
Gene ID: HRGMv2_1794_9_922
Type: TF
Location: 973912 - 974883 (+)
Type: TF
Location: 973912 - 974883 (+)
Gene ID: HRGMv2_1794_9_923
Type: TC
Location: 974874 - 976265 (-)
Type: TC
Location: 974874 - 976265 (-)
Gene ID: HRGMv2_1794_9_924
Type: peptidase
Location: 976291 - 977460 (-)
Type: peptidase
Location: 976291 - 977460 (-)
Gene ID: HRGMv2_1794_9_925
Type: CAZyme
Location: 977632 - 979929 (+)
Type: CAZyme
Location: 977632 - 979929 (+)
Gene ID: HRGMv2_1794_9_926
Type:
Location: 980054 - 980338 (+)
Type:
Location: 980054 - 980338 (+)
Gene ID: HRGMv2_1794_9_927
Type: TC
Location: 980576 - 982222 (+)
Type: TC
Location: 980576 - 982222 (+)
Gene ID: HRGMv2_1794_9_928
Type: TC
Location: 982219 - 983184 (+)
Type: TC
Location: 982219 - 983184 (+)
Gene ID: HRGMv2_1794_9_929
Type: pfam
Location: 983386 - 983799 (+)
Type: pfam
Location: 983386 - 983799 (+)
Gene ID: HRGMv2_1794_9_930
Type: TF
Location: 985061 - 985279 (-)
Type: TF
Location: 985061 - 985279 (-)
Gene ID: HRGMv2_1794_9_931
Type: CAZyme
Location: 986174 - 994756 (+)
Type: CAZyme
Location: 986174 - 994756 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella aerogenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1794_9_921 | vegetarian > vegan | 1.13249 | 0.03242 |
| HRGMv2_1794_9_922 | vegetarian > vegan | 1.04715 | 0.03242 |