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Cluster: HRGMv2_1794_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1794_2 HRGMv2_1794_2_47 48629 49924 + 2.A.1.6.7
pfam HRGMv2_1794_2 HRGMv2_1794_2_48 49977 50309 - YbfN
TC HRGMv2_1794_2 HRGMv2_1794_2_49 50357 51757 - 1.B.25.1.13
pfam HRGMv2_1794_2 HRGMv2_1794_2_50 52193 53860 - tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2
TC HRGMv2_1794_2 HRGMv2_1794_2_51 54038 55990 - 4.A.1.1.2
pfam HRGMv2_1794_2 HRGMv2_1794_2_52 56305 57105 + Glucosamine_iso
CAZyme HRGMv2_1794_2 HRGMv2_1794_2_53 57208 58356 + CE9
Gene ID: HRGMv2_1794_2_47
Type: TC
Location: 48629 - 49924 (+)
Gene ID: HRGMv2_1794_2_48
Type: pfam
Location: 49977 - 50309 (-)
Gene ID: HRGMv2_1794_2_49
Type: TC
Location: 50357 - 51757 (-)
Gene ID: HRGMv2_1794_2_50
Type: pfam
Location: 52193 - 53860 (-)
Gene ID: HRGMv2_1794_2_51
Type: TC
Location: 54038 - 55990 (-)
Gene ID: HRGMv2_1794_2_52
Type: pfam
Location: 56305 - 57105 (+)
Gene ID: HRGMv2_1794_2_53
Type: CAZyme
Location: 57208 - 58356 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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