Cluster: HRGMv2_1794_CGC15
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1794
- CGC Family ID: CGCFAM_01374
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_118 | 125559 | 126755 | + | 1.B.3.1.8 |
| pfam | HRGMv2_1794_7 | HRGMv2_1794_7_119 | 127040 | 128077 | - | Virulence_RhuM |
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_120 | 129466 | 130860 | + | 2.A.2.3.4 |
| CAZyme | HRGMv2_1794_7 | HRGMv2_1794_7_121 | 130873 | 133191 | + | GH31_3 |
| TF | HRGMv2_1794_7 | HRGMv2_1794_7_122 | 133339 | 134061 | + | HTH_6 |
| CAZyme | HRGMv2_1794_7 | HRGMv2_1794_7_123 | 134549 | 135928 | - | GH4 |
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_124 | 135942 | 137501 | - | 4.A.1.1.16 |
| pfam | HRGMv2_1794_7 | HRGMv2_1794_7_125 | 137694 | 139403 | - | AsmA |
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_126 | 139565 | 140956 | - | 2.A.40.4.2 |
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_127 | 141244 | 142446 | + | 2.A.27.1.1 |
| pfam | HRGMv2_1794_7 | HRGMv2_1794_7_128 | 142561 | 144072 | - | FGGY_N | FGGY_C |
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_129 | 144094 | 144942 | - | 1.A.8.1.1 |
| pfam | HRGMv2_1794_7 | HRGMv2_1794_7_130 | 145387 | 145626 | + | ZapB |
| TC | HRGMv2_1794_7 | HRGMv2_1794_7_131 | 145779 | 146768 | + | 3.A.1.6.1 |
Gene ID: HRGMv2_1794_7_118
Type: TC
Location: 125559 - 126755 (+)
Type: TC
Location: 125559 - 126755 (+)
Gene ID: HRGMv2_1794_7_119
Type: pfam
Location: 127040 - 128077 (-)
Type: pfam
Location: 127040 - 128077 (-)
Gene ID: HRGMv2_1794_7_120
Type: TC
Location: 129466 - 130860 (+)
Type: TC
Location: 129466 - 130860 (+)
Gene ID: HRGMv2_1794_7_121
Type: CAZyme
Location: 130873 - 133191 (+)
Type: CAZyme
Location: 130873 - 133191 (+)
Gene ID: HRGMv2_1794_7_122
Type: TF
Location: 133339 - 134061 (+)
Type: TF
Location: 133339 - 134061 (+)
Gene ID: HRGMv2_1794_7_123
Type: CAZyme
Location: 134549 - 135928 (-)
Type: CAZyme
Location: 134549 - 135928 (-)
Gene ID: HRGMv2_1794_7_124
Type: TC
Location: 135942 - 137501 (-)
Type: TC
Location: 135942 - 137501 (-)
Gene ID: HRGMv2_1794_7_125
Type: pfam
Location: 137694 - 139403 (-)
Type: pfam
Location: 137694 - 139403 (-)
Gene ID: HRGMv2_1794_7_126
Type: TC
Location: 139565 - 140956 (-)
Type: TC
Location: 139565 - 140956 (-)
Gene ID: HRGMv2_1794_7_127
Type: TC
Location: 141244 - 142446 (+)
Type: TC
Location: 141244 - 142446 (+)
Gene ID: HRGMv2_1794_7_128
Type: pfam
Location: 142561 - 144072 (-)
Type: pfam
Location: 142561 - 144072 (-)
Gene ID: HRGMv2_1794_7_129
Type: TC
Location: 144094 - 144942 (-)
Type: TC
Location: 144094 - 144942 (-)
Gene ID: HRGMv2_1794_7_130
Type: pfam
Location: 145387 - 145626 (+)
Type: pfam
Location: 145387 - 145626 (+)
Gene ID: HRGMv2_1794_7_131
Type: TC
Location: 145779 - 146768 (+)
Type: TC
Location: 145779 - 146768 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella aerogenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1794_7_120 | vegetarian > omnivore | 1.14095 | 0.04061 |
| HRGMv2_1794_7_120 | vegetarian > vegan | 1.13257 | 0.03242 |