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Cluster: HRGMv2_1784_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1784_4 HRGMv2_1784_4_212 247493 249790 + GH3
TC HRGMv2_1784_4 HRGMv2_1784_4_213 249992 250909 + 3.A.1.12.15
TC HRGMv2_1784_4 HRGMv2_1784_4_214 250917 252074 + 3.A.1.12.15
TC HRGMv2_1784_4 HRGMv2_1784_4_215 252067 253014 + 3.A.1.12.15
TC HRGMv2_1784_4 HRGMv2_1784_4_216 252998 253735 + 3.A.1.12.15
NULL(UNKNOWN) HRGMv2_1784_4 HRGMv2_1784_4_217 253710 253823 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1784_4 HRGMv2_1784_4_218 253883 254614 - MerR
TC HRGMv2_1784_4 HRGMv2_1784_4_219 254824 256512 + 9.B.33.1.1
Gene ID: HRGMv2_1784_4_212
Type: CAZyme
Location: 247493 - 249790 (+)
Gene ID: HRGMv2_1784_4_213
Type: TC
Location: 249992 - 250909 (+)
Gene ID: HRGMv2_1784_4_214
Type: TC
Location: 250917 - 252074 (+)
Gene ID: HRGMv2_1784_4_215
Type: TC
Location: 252067 - 253014 (+)
Gene ID: HRGMv2_1784_4_216
Type: TC
Location: 252998 - 253735 (+)
Gene ID: HRGMv2_1784_4_217
Type:
Location: 253710 - 253823 (-)
Gene ID: HRGMv2_1784_4_218
Type: TF
Location: 253883 - 254614 (-)
Gene ID: HRGMv2_1784_4_219
Type: TC
Location: 254824 - 256512 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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