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Cluster: HRGMv2_1784_CGC69

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_24 HRGMv2_1784_24_103 114781 115389 + 3.D.1.9.2
TC HRGMv2_1784_24 HRGMv2_1784_24_104 115386 117212 + 3.D.1.9.2
TC HRGMv2_1784_24 HRGMv2_1784_24_105 117215 118138 + 3.D.1.9.2
TC HRGMv2_1784_24 HRGMv2_1784_24_106 118155 119864 + 3.D.1.9.2
TC HRGMv2_1784_24 HRGMv2_1784_24_107 119874 120416 + 3.D.1.9.2
TC HRGMv2_1784_24 HRGMv2_1784_24_108 120416 121183 + 3.D.1.9.2
pfam HRGMv2_1784_24 HRGMv2_1784_24_109 121180 121590 + HycH
peptidase HRGMv2_1784_24 HRGMv2_1784_24_110 121583 122053 + A31.003
CAZyme HRGMv2_1784_24 HRGMv2_1784_24_111 122499 123923 - GH1
TC HRGMv2_1784_24 HRGMv2_1784_24_112 123952 125394 - 4.A.1.2.3
TF HRGMv2_1784_24 HRGMv2_1784_24_113 125661 126674 + LacI
TC HRGMv2_1784_24 HRGMv2_1784_24_114 126822 127349 + 5.A.3.11.1
pfam HRGMv2_1784_24 HRGMv2_1784_24_115 127362 129596 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC HRGMv2_1784_24 HRGMv2_1784_24_116 129593 130639 + 2.A.52.1.1
Gene ID: HRGMv2_1784_24_103
Type: TC
Location: 114781 - 115389 (+)
Gene ID: HRGMv2_1784_24_104
Type: TC
Location: 115386 - 117212 (+)
Gene ID: HRGMv2_1784_24_105
Type: TC
Location: 117215 - 118138 (+)
Gene ID: HRGMv2_1784_24_106
Type: TC
Location: 118155 - 119864 (+)
Gene ID: HRGMv2_1784_24_107
Type: TC
Location: 119874 - 120416 (+)
Gene ID: HRGMv2_1784_24_108
Type: TC
Location: 120416 - 121183 (+)
Gene ID: HRGMv2_1784_24_109
Type: pfam
Location: 121180 - 121590 (+)
Gene ID: HRGMv2_1784_24_110
Type: peptidase
Location: 121583 - 122053 (+)
Gene ID: HRGMv2_1784_24_111
Type: CAZyme
Location: 122499 - 123923 (-)
Gene ID: HRGMv2_1784_24_112
Type: TC
Location: 123952 - 125394 (-)
Gene ID: HRGMv2_1784_24_113
Type: TF
Location: 125661 - 126674 (+)
Gene ID: HRGMv2_1784_24_114
Type: TC
Location: 126822 - 127349 (+)
Gene ID: HRGMv2_1784_24_115
Type: pfam
Location: 127362 - 129596 (+)
Gene ID: HRGMv2_1784_24_116
Type: TC
Location: 129593 - 130639 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_24_109 vegetarian > vegan 1.03819 0.01888

🧭 Explore Read Mapping of CGC

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