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Cluster: HRGMv2_1784_CGC63

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_20 HRGMv2_1784_20_11 9504 10925 - 2.A.1.3.51
pfam HRGMv2_1784_20 HRGMv2_1784_20_12 11299 11550 + DUF2766
TC HRGMv2_1784_20 HRGMv2_1784_20_13 11599 13161 - 2.A.2.5.1
pfam HRGMv2_1784_20 HRGMv2_1784_20_14 13604 14107 - Ferritin
TC HRGMv2_1784_20 HRGMv2_1784_20_15 15002 15982 + 3.A.1.2.2
TC HRGMv2_1784_20 HRGMv2_1784_20_16 16045 17559 + 3.A.1.2.2
TC HRGMv2_1784_20 HRGMv2_1784_20_17 17574 18554 + 3.A.1.2.2
pfam HRGMv2_1784_20 HRGMv2_1784_20_18 18716 19519 + Trehalose_PPase | Hydrolase_3
CAZyme HRGMv2_1784_20 HRGMv2_1784_20_19 19494 20918 + GT20
pfam HRGMv2_1784_20 HRGMv2_1784_20_20 20954 21382 - Usp
TC HRGMv2_1784_20 HRGMv2_1784_20_21 21743 23326 + 2.A.2.5.2
CAZyme HRGMv2_1784_20 HRGMv2_1784_20_22 23331 24470 + GH105
pfam HRGMv2_1784_20 HRGMv2_1784_20_23 24572 26305 - tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1
pfam HRGMv2_1784_20 HRGMv2_1784_20_24 26536 27105 + YecM
TC HRGMv2_1784_20 HRGMv2_1784_20_25 27181 27924 + 9.B.158.1.2
Gene ID: HRGMv2_1784_20_11
Type: TC
Location: 9504 - 10925 (-)
Gene ID: HRGMv2_1784_20_12
Type: pfam
Location: 11299 - 11550 (+)
Gene ID: HRGMv2_1784_20_13
Type: TC
Location: 11599 - 13161 (-)
Gene ID: HRGMv2_1784_20_14
Type: pfam
Location: 13604 - 14107 (-)
Gene ID: HRGMv2_1784_20_15
Type: TC
Location: 15002 - 15982 (+)
Gene ID: HRGMv2_1784_20_16
Type: TC
Location: 16045 - 17559 (+)
Gene ID: HRGMv2_1784_20_17
Type: TC
Location: 17574 - 18554 (+)
Gene ID: HRGMv2_1784_20_18
Type: pfam
Location: 18716 - 19519 (+)
Gene ID: HRGMv2_1784_20_19
Type: CAZyme
Location: 19494 - 20918 (+)
Gene ID: HRGMv2_1784_20_20
Type: pfam
Location: 20954 - 21382 (-)
Gene ID: HRGMv2_1784_20_21
Type: TC
Location: 21743 - 23326 (+)
Gene ID: HRGMv2_1784_20_22
Type: CAZyme
Location: 23331 - 24470 (+)
Gene ID: HRGMv2_1784_20_23
Type: pfam
Location: 24572 - 26305 (-)
Gene ID: HRGMv2_1784_20_24
Type: pfam
Location: 26536 - 27105 (+)
Gene ID: HRGMv2_1784_20_25
Type: TC
Location: 27181 - 27924 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_20_16 vegan > omnivore 1.14106 0.01385
HRGMv2_1784_20_21 vegetarian > omnivore 2.39305 0.01733
HRGMv2_1784_20_21 vegetarian > vegan 1.05246 0.04869
HRGMv2_1784_20_22 vegetarian > omnivore 2.28808 0.03840

🧭 Explore Read Mapping of CGC

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