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Cluster: HRGMv2_1784_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_18 HRGMv2_1784_18_215 231718 232383 - 9.B.100.1.1
TF HRGMv2_1784_18 HRGMv2_1784_18_216 232561 233544 + HTH_8
TC HRGMv2_1784_18 HRGMv2_1784_18_217 233535 234926 - 2.A.1.3.23
pfam HRGMv2_1784_18 HRGMv2_1784_18_218 235051 236262 + OrfB_IS605 | Cas12f1-like_TNB | HTH_OrfB_IS605
peptidase HRGMv2_1784_18 HRGMv2_1784_18_219 236259 237428 - M20.UPD
CAZyme HRGMv2_1784_18 HRGMv2_1784_18_220 237601 239907 + GH39
Gene ID: HRGMv2_1784_18_215
Type: TC
Location: 231718 - 232383 (-)
Gene ID: HRGMv2_1784_18_216
Type: TF
Location: 232561 - 233544 (+)
Gene ID: HRGMv2_1784_18_217
Type: TC
Location: 233535 - 234926 (-)
Gene ID: HRGMv2_1784_18_218
Type: pfam
Location: 235051 - 236262 (+)
Gene ID: HRGMv2_1784_18_219
Type: peptidase
Location: 236259 - 237428 (-)
Gene ID: HRGMv2_1784_18_220
Type: CAZyme
Location: 237601 - 239907 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_18_215 vegetarian > vegan 1.99258 0.00460

🧭 Explore Read Mapping of CGC

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