Cluster: HRGMv2_1784_CGC52
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1784
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1784_17 | HRGMv2_1784_17_400 | 438335 | 439633 | + | 2.A.8.1.8 |
| pfam | HRGMv2_1784_17 | HRGMv2_1784_17_401 | 440059 | 441165 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | HRGMv2_1784_17 | HRGMv2_1784_17_402 | 441413 | 443599 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_1784_17 | HRGMv2_1784_17_403 | 443596 | 445572 | + | CBM48 | GH13_11 |
| pfam | HRGMv2_1784_17 | HRGMv2_1784_17_404 | 445653 | 446948 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1784_17 | HRGMv2_1784_17_405 | 446948 | 448381 | + | GT5 |
| CAZyme | HRGMv2_1784_17 | HRGMv2_1784_17_406 | 448399 | 450846 | + | GT35 |
| pfam | HRGMv2_1784_17 | HRGMv2_1784_17_407 | 450933 | 452441 | - | DAO | DAO_C |
| STP | HRGMv2_1784_17 | HRGMv2_1784_17_408 | 452604 | 452984 | + | Rhodanese |
| TC | HRGMv2_1784_17 | HRGMv2_1784_17_409 | 453125 | 453955 | + | 9.B.104.1.1 |
| TF | HRGMv2_1784_17 | HRGMv2_1784_17_410 | 454027 | 454785 | + | HTH_DeoR |
| TF | HRGMv2_1784_17 | HRGMv2_1784_17_411 | 454792 | 457497 | - | GerE |
| CAZyme | HRGMv2_1784_17 | HRGMv2_1784_17_412 | 458119 | 460509 | + | GT35 |
| CAZyme | HRGMv2_1784_17 | HRGMv2_1784_17_413 | 460520 | 462607 | + | GH77 |
| TC | HRGMv2_1784_17 | HRGMv2_1784_17_414 | 462711 | 464027 | - | 2.A.8.1.4 |
Gene ID: HRGMv2_1784_17_400
Type: TC
Location: 438335 - 439633 (+)
Type: TC
Location: 438335 - 439633 (+)
Gene ID: HRGMv2_1784_17_401
Type: pfam
Location: 440059 - 441165 (+)
Type: pfam
Location: 440059 - 441165 (+)
Gene ID: HRGMv2_1784_17_402
Type: CAZyme
Location: 441413 - 443599 (+)
Type: CAZyme
Location: 441413 - 443599 (+)
Gene ID: HRGMv2_1784_17_403
Type: CAZyme
Location: 443596 - 445572 (+)
Type: CAZyme
Location: 443596 - 445572 (+)
Gene ID: HRGMv2_1784_17_404
Type: pfam
Location: 445653 - 446948 (+)
Type: pfam
Location: 445653 - 446948 (+)
Gene ID: HRGMv2_1784_17_405
Type: CAZyme
Location: 446948 - 448381 (+)
Type: CAZyme
Location: 446948 - 448381 (+)
Gene ID: HRGMv2_1784_17_406
Type: CAZyme
Location: 448399 - 450846 (+)
Type: CAZyme
Location: 448399 - 450846 (+)
Gene ID: HRGMv2_1784_17_407
Type: pfam
Location: 450933 - 452441 (-)
Type: pfam
Location: 450933 - 452441 (-)
Gene ID: HRGMv2_1784_17_408
Type: STP
Location: 452604 - 452984 (+)
Type: STP
Location: 452604 - 452984 (+)
Gene ID: HRGMv2_1784_17_409
Type: TC
Location: 453125 - 453955 (+)
Type: TC
Location: 453125 - 453955 (+)
Gene ID: HRGMv2_1784_17_410
Type: TF
Location: 454027 - 454785 (+)
Type: TF
Location: 454027 - 454785 (+)
Gene ID: HRGMv2_1784_17_411
Type: TF
Location: 454792 - 457497 (-)
Type: TF
Location: 454792 - 457497 (-)
Gene ID: HRGMv2_1784_17_412
Type: CAZyme
Location: 458119 - 460509 (+)
Type: CAZyme
Location: 458119 - 460509 (+)
Gene ID: HRGMv2_1784_17_413
Type: CAZyme
Location: 460520 - 462607 (+)
Type: CAZyme
Location: 460520 - 462607 (+)
Gene ID: HRGMv2_1784_17_414
Type: TC
Location: 462711 - 464027 (-)
Type: TC
Location: 462711 - 464027 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella ornithinolytica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1784_17_408 | vegetarian > omnivore | 1.31483 | 0.02716 |