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Cluster: HRGMv2_1784_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_17 HRGMv2_1784_17_239 253900 254970 - 3.A.1.2.11
TC HRGMv2_1784_17 HRGMv2_1784_17_240 254984 256504 - 3.A.1.2.1
TF HRGMv2_1784_17 HRGMv2_1784_17_241 256728 257546 + 0040266
TC HRGMv2_1784_17 HRGMv2_1784_17_242 257664 258152 + 3.D.1.9.2
STP HRGMv2_1784_17 HRGMv2_1784_17_243 258235 259494 - Aminotran_1_2
CAZyme HRGMv2_1784_17 HRGMv2_1784_17_244 259669 261702 - GH13_19
CAZyme HRGMv2_1784_17 HRGMv2_1784_17_245 262273 262836 + GH73
TF HRGMv2_1784_17 HRGMv2_1784_17_246 262890 264068 - HTH_AraC | HTH_AraC
TC HRGMv2_1784_17 HRGMv2_1784_17_247 264194 265375 - 3.A.1.2.4
TC HRGMv2_1784_17 HRGMv2_1784_17_248 265353 266894 - 3.A.1.2.4
TC HRGMv2_1784_17 HRGMv2_1784_17_249 266959 267951 - 3.A.1.2.4
NULL(UNKNOWN) HRGMv2_1784_17 HRGMv2_1784_17_250 268327 269649 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1784_17 HRGMv2_1784_17_251 269737 271194 + FGGY_N | FGGY_C
TC HRGMv2_1784_17 HRGMv2_1784_17_252 271235 272230 - 9.B.97.1.1
Gene ID: HRGMv2_1784_17_239
Type: TC
Location: 253900 - 254970 (-)
Gene ID: HRGMv2_1784_17_240
Type: TC
Location: 254984 - 256504 (-)
Gene ID: HRGMv2_1784_17_241
Type: TF
Location: 256728 - 257546 (+)
Gene ID: HRGMv2_1784_17_242
Type: TC
Location: 257664 - 258152 (+)
Gene ID: HRGMv2_1784_17_243
Type: STP
Location: 258235 - 259494 (-)
Gene ID: HRGMv2_1784_17_244
Type: CAZyme
Location: 259669 - 261702 (-)
Gene ID: HRGMv2_1784_17_245
Type: CAZyme
Location: 262273 - 262836 (+)
Gene ID: HRGMv2_1784_17_246
Type: TF
Location: 262890 - 264068 (-)
Gene ID: HRGMv2_1784_17_247
Type: TC
Location: 264194 - 265375 (-)
Gene ID: HRGMv2_1784_17_248
Type: TC
Location: 265353 - 266894 (-)
Gene ID: HRGMv2_1784_17_249
Type: TC
Location: 266959 - 267951 (-)
Gene ID: HRGMv2_1784_17_250
Type:
Location: 268327 - 269649 (+)
Gene ID: HRGMv2_1784_17_251
Type: pfam
Location: 269737 - 271194 (+)
Gene ID: HRGMv2_1784_17_252
Type: TC
Location: 271235 - 272230 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_17_247 vegetarian > omnivore 1.67928 0.03840

🧭 Explore Read Mapping of CGC

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