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Cluster: HRGMv2_1784_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_17 HRGMv2_1784_17_59 65317 66978 + 2.A.81.1.5
TF HRGMv2_1784_17 HRGMv2_1784_17_60 66946 67692 - GntR
TC HRGMv2_1784_17 HRGMv2_1784_17_61 67991 69613 + 4.A.1.1.10
CAZyme HRGMv2_1784_17 HRGMv2_1784_17_62 69610 70932 + GH4
TC HRGMv2_1784_17 HRGMv2_1784_17_63 71041 71388 + 9.B.51.1.1
pfam HRGMv2_1784_17 HRGMv2_1784_17_64 71378 71740 + DUF202
STP HRGMv2_1784_17 HRGMv2_1784_17_65 71788 73116 - PALP
TC HRGMv2_1784_17 HRGMv2_1784_17_66 73134 74471 - 2.A.8.1.5
TF HRGMv2_1784_17 HRGMv2_1784_17_67 74697 75623 + HTH_1
TC HRGMv2_1784_17 HRGMv2_1784_17_68 75690 76874 - 2.A.1.2.9
TC HRGMv2_1784_17 HRGMv2_1784_17_69 77050 77883 - 2.A.7.31.3
Gene ID: HRGMv2_1784_17_59
Type: TC
Location: 65317 - 66978 (+)
Gene ID: HRGMv2_1784_17_60
Type: TF
Location: 66946 - 67692 (-)
Gene ID: HRGMv2_1784_17_61
Type: TC
Location: 67991 - 69613 (+)
Gene ID: HRGMv2_1784_17_62
Type: CAZyme
Location: 69610 - 70932 (+)
Gene ID: HRGMv2_1784_17_63
Type: TC
Location: 71041 - 71388 (+)
Gene ID: HRGMv2_1784_17_64
Type: pfam
Location: 71378 - 71740 (+)
Gene ID: HRGMv2_1784_17_65
Type: STP
Location: 71788 - 73116 (-)
Gene ID: HRGMv2_1784_17_66
Type: TC
Location: 73134 - 74471 (-)
Gene ID: HRGMv2_1784_17_67
Type: TF
Location: 74697 - 75623 (+)
Gene ID: HRGMv2_1784_17_68
Type: TC
Location: 75690 - 76874 (-)
Gene ID: HRGMv2_1784_17_69
Type: TC
Location: 77050 - 77883 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_17_65 vegan > omnivore 1.24488 0.00181

🧭 Explore Read Mapping of CGC

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