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Cluster: HRGMv2_1784_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_16 HRGMv2_1784_16_67 78219 79598 + 2.A.2.3.5
CAZyme HRGMv2_1784_16 HRGMv2_1784_16_68 79611 81230 + CBM91 | GH43_11
TF HRGMv2_1784_16 HRGMv2_1784_16_69 81235 81993 - HTH_Mga
TC HRGMv2_1784_16 HRGMv2_1784_16_70 82501 83811 - 3.A.1.1.3
TC HRGMv2_1784_16 HRGMv2_1784_16_71 83804 84877 - 3.A.1.1.3
pfam HRGMv2_1784_16 HRGMv2_1784_16_72 84883 85707 - Metallophos | Metallophos_2
TC HRGMv2_1784_16 HRGMv2_1784_16_73 85718 86605 - 3.A.1.1.18
TC HRGMv2_1784_16 HRGMv2_1784_16_74 86595 87467 - 3.A.1.1.25
Gene ID: HRGMv2_1784_16_67
Type: TC
Location: 78219 - 79598 (+)
Gene ID: HRGMv2_1784_16_68
Type: CAZyme
Location: 79611 - 81230 (+)
Gene ID: HRGMv2_1784_16_69
Type: TF
Location: 81235 - 81993 (-)
Gene ID: HRGMv2_1784_16_70
Type: TC
Location: 82501 - 83811 (-)
Gene ID: HRGMv2_1784_16_71
Type: TC
Location: 83804 - 84877 (-)
Gene ID: HRGMv2_1784_16_72
Type: pfam
Location: 84883 - 85707 (-)
Gene ID: HRGMv2_1784_16_73
Type: TC
Location: 85718 - 86605 (-)
Gene ID: HRGMv2_1784_16_74
Type: TC
Location: 86595 - 87467 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_16_69 vegan > omnivore 3.26068 0.03428
HRGMv2_1784_16_69 vegetarian > omnivore 3.10793 0.02450

🧭 Explore Read Mapping of CGC

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