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Cluster: HRGMv2_1784_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_16 HRGMv2_1784_16_28 26764 27072 + 4.A.3.2.9
CAZyme HRGMv2_1784_16 HRGMv2_1784_16_29 27152 28459 + GH4
TC HRGMv2_1784_16 HRGMv2_1784_16_30 28485 29837 + 4.A.3.2.2
CAZyme HRGMv2_1784_16 HRGMv2_1784_16_31 29934 31589 - GH13_29
TC HRGMv2_1784_16 HRGMv2_1784_16_32 31641 33059 - 4.A.1.2.4
TF HRGMv2_1784_16 HRGMv2_1784_16_33 33189 34136 - LacI
TC HRGMv2_1784_16 HRGMv2_1784_16_34 34515 37223 + 3.A.3.4.1
CAZyme HRGMv2_1784_16 HRGMv2_1784_16_35 37392 39785 + GH20
Gene ID: HRGMv2_1784_16_28
Type: TC
Location: 26764 - 27072 (+)
Gene ID: HRGMv2_1784_16_29
Type: CAZyme
Location: 27152 - 28459 (+)
Gene ID: HRGMv2_1784_16_30
Type: TC
Location: 28485 - 29837 (+)
Gene ID: HRGMv2_1784_16_31
Type: CAZyme
Location: 29934 - 31589 (-)
Gene ID: HRGMv2_1784_16_32
Type: TC
Location: 31641 - 33059 (-)
Gene ID: HRGMv2_1784_16_33
Type: TF
Location: 33189 - 34136 (-)
Gene ID: HRGMv2_1784_16_34
Type: TC
Location: 34515 - 37223 (+)
Gene ID: HRGMv2_1784_16_35
Type: CAZyme
Location: 37392 - 39785 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_16_35 vegetarian > omnivore 1.80307 0.03281

🧭 Explore Read Mapping of CGC

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