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Cluster: HRGMv2_1784_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_2 HRGMv2_1784_2_188 214521 215564 - 9.B.8.3.4
pfam HRGMv2_1784_2 HRGMv2_1784_2_189 215580 216458 - HTH_31 | MLTR_LBD
TC HRGMv2_1784_2 HRGMv2_1784_2_190 216568 217995 + 2.A.1.3.38
TC HRGMv2_1784_2 HRGMv2_1784_2_191 218073 219317 + 1.A.23.4.5
TF HRGMv2_1784_2 HRGMv2_1784_2_192 219327 220307 - LacI
NULL(UNKNOWN) HRGMv2_1784_2 HRGMv2_1784_2_193 220551 220967 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1784_2 HRGMv2_1784_2_194 221006 222157 - GH109
pfam HRGMv2_1784_2 HRGMv2_1784_2_195 222154 223182 - AP_endonuc_2
TC HRGMv2_1784_2 HRGMv2_1784_2_196 223198 224439 - 2.A.1.10.4
TC HRGMv2_1784_2 HRGMv2_1784_2_197 224592 225968 - 2.A.3.1.1
TC HRGMv2_1784_2 HRGMv2_1784_2_198 226132 228327 - 1.B.14.1.15
Gene ID: HRGMv2_1784_2_188
Type: TC
Location: 214521 - 215564 (-)
Gene ID: HRGMv2_1784_2_189
Type: pfam
Location: 215580 - 216458 (-)
Gene ID: HRGMv2_1784_2_190
Type: TC
Location: 216568 - 217995 (+)
Gene ID: HRGMv2_1784_2_191
Type: TC
Location: 218073 - 219317 (+)
Gene ID: HRGMv2_1784_2_192
Type: TF
Location: 219327 - 220307 (-)
Gene ID: HRGMv2_1784_2_193
Type:
Location: 220551 - 220967 (+)
Gene ID: HRGMv2_1784_2_194
Type: CAZyme
Location: 221006 - 222157 (-)
Gene ID: HRGMv2_1784_2_195
Type: pfam
Location: 222154 - 223182 (-)
Gene ID: HRGMv2_1784_2_196
Type: TC
Location: 223198 - 224439 (-)
Gene ID: HRGMv2_1784_2_197
Type: TC
Location: 224592 - 225968 (-)
Gene ID: HRGMv2_1784_2_198
Type: TC
Location: 226132 - 228327 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_2_196 vegetarian > vegan 1.18719 0.04869

🧭 Explore Read Mapping of CGC

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