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Cluster: HRGMv2_1784_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_8 HRGMv2_1784_8_440 447633 448862 - 2.A.42.2.5
TC HRGMv2_1784_8 HRGMv2_1784_8_441 448996 449457 - 2.A.117.1.3
TF HRGMv2_1784_8 HRGMv2_1784_8_442 449598 450479 + HTH_1
pfam HRGMv2_1784_8 HRGMv2_1784_8_443 450585 451763 + Thiolase_N | ketoacyl-synt | Thiolase_C
TC HRGMv2_1784_8 HRGMv2_1784_8_444 452017 452712 + 1.B.35.1.7
CAZyme HRGMv2_1784_8 HRGMv2_1784_8_445 452997 454172 - PL22 | PL22_1
pfam HRGMv2_1784_8 HRGMv2_1784_8_446 454710 455471 + adh_short | KR | adh_short_C2
TC HRGMv2_1784_8 HRGMv2_1784_8_447 455848 457266 + 2.A.1.1.2
TF HRGMv2_1784_8 HRGMv2_1784_8_448 457267 458262 - LacI
TC HRGMv2_1784_8 HRGMv2_1784_8_449 458508 459749 + 2.A.1.5.2
CAZyme HRGMv2_1784_8 HRGMv2_1784_8_450 459768 461201 + GH32
TC HRGMv2_1784_8 HRGMv2_1784_8_451 461441 462784 + 1.B.15.1.1
CAZyme HRGMv2_1784_8 HRGMv2_1784_8_452 462893 464020 - PL22 | PL22
TC HRGMv2_1784_8 HRGMv2_1784_8_453 464085 465371 - 3.A.1.1.11
TC HRGMv2_1784_8 HRGMv2_1784_8_454 465388 466515 - 3.A.1.1.11
TC HRGMv2_1784_8 HRGMv2_1784_8_455 466528 467430 - 3.A.1.1.11
TC HRGMv2_1784_8 HRGMv2_1784_8_456 467423 468313 - 3.A.1.1.11
Gene ID: HRGMv2_1784_8_440
Type: TC
Location: 447633 - 448862 (-)
Gene ID: HRGMv2_1784_8_441
Type: TC
Location: 448996 - 449457 (-)
Gene ID: HRGMv2_1784_8_442
Type: TF
Location: 449598 - 450479 (+)
Gene ID: HRGMv2_1784_8_443
Type: pfam
Location: 450585 - 451763 (+)
Gene ID: HRGMv2_1784_8_444
Type: TC
Location: 452017 - 452712 (+)
Gene ID: HRGMv2_1784_8_445
Type: CAZyme
Location: 452997 - 454172 (-)
Gene ID: HRGMv2_1784_8_446
Type: pfam
Location: 454710 - 455471 (+)
Gene ID: HRGMv2_1784_8_447
Type: TC
Location: 455848 - 457266 (+)
Gene ID: HRGMv2_1784_8_448
Type: TF
Location: 457267 - 458262 (-)
Gene ID: HRGMv2_1784_8_449
Type: TC
Location: 458508 - 459749 (+)
Gene ID: HRGMv2_1784_8_450
Type: CAZyme
Location: 459768 - 461201 (+)
Gene ID: HRGMv2_1784_8_451
Type: TC
Location: 461441 - 462784 (+)
Gene ID: HRGMv2_1784_8_452
Type: CAZyme
Location: 462893 - 464020 (-)
Gene ID: HRGMv2_1784_8_453
Type: TC
Location: 464085 - 465371 (-)
Gene ID: HRGMv2_1784_8_454
Type: TC
Location: 465388 - 466515 (-)
Gene ID: HRGMv2_1784_8_455
Type: TC
Location: 466528 - 467430 (-)
Gene ID: HRGMv2_1784_8_456
Type: TC
Location: 467423 - 468313 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_8_445 vegetarian > omnivore 1.50502 0.03840
HRGMv2_1784_8_453 vegetarian > omnivore 1.50295 0.03574
HRGMv2_1784_8_453 vegetarian > vegan 1.16029 0.04869
HRGMv2_1784_8_454 vegan > omnivore 1.31482 0.02747
HRGMv2_1784_8_454 vegetarian > omnivore 2.06462 0.00694
HRGMv2_1784_8_455 vegetarian > omnivore 1.11424 0.03840

🧭 Explore Read Mapping of CGC

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