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Cluster: HRGMv2_1784_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1784_8 HRGMv2_1784_8_54 61444 62169 + GT51
TC HRGMv2_1784_8 HRGMv2_1784_8_55 62231 62503 - 8.A.8.1.5
pfam HRGMv2_1784_8 HRGMv2_1784_8_56 62500 63354 - RapZ-like_N | PapZ_C
TC HRGMv2_1784_8 HRGMv2_1784_8_57 63400 63888 - 4.A.2.1.4
pfam HRGMv2_1784_8 HRGMv2_1784_8_58 63961 64248 - Ribosomal_S30AE
pfam HRGMv2_1784_8 HRGMv2_1784_8_59 64271 65704 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC HRGMv2_1784_8 HRGMv2_1784_8_60 65752 66477 - 1.B.42.1.2
TC HRGMv2_1784_8 HRGMv2_1784_8_61 66484 67029 - 1.B.42.1.2
TC HRGMv2_1784_8 HRGMv2_1784_8_62 66998 67573 - 1.B.42.1.2
pfam HRGMv2_1784_8 HRGMv2_1784_8_63 67570 68136 - Hydrolase_3
STP HRGMv2_1784_8 HRGMv2_1784_8_64 68151 69137 - CBS | CBS | SIS
TC HRGMv2_1784_8 HRGMv2_1784_8_65 69152 70129 - 2.A.19.5.1
TC HRGMv2_1784_8 HRGMv2_1784_8_66 70341 71159 + 3.A.1.27.3
TC HRGMv2_1784_8 HRGMv2_1784_8_67 71159 71941 + 3.A.1.27.3
TC HRGMv2_1784_8 HRGMv2_1784_8_68 71946 72497 + 3.A.1.27.3
TC HRGMv2_1784_8 HRGMv2_1784_8_69 72516 73151 + 3.A.1.27.3
TC HRGMv2_1784_8 HRGMv2_1784_8_70 73151 73441 + 3.A.1.27.3
Gene ID: HRGMv2_1784_8_54
Type: CAZyme
Location: 61444 - 62169 (+)
Gene ID: HRGMv2_1784_8_55
Type: TC
Location: 62231 - 62503 (-)
Gene ID: HRGMv2_1784_8_56
Type: pfam
Location: 62500 - 63354 (-)
Gene ID: HRGMv2_1784_8_57
Type: TC
Location: 63400 - 63888 (-)
Gene ID: HRGMv2_1784_8_58
Type: pfam
Location: 63961 - 64248 (-)
Gene ID: HRGMv2_1784_8_59
Type: pfam
Location: 64271 - 65704 (-)
Gene ID: HRGMv2_1784_8_60
Type: TC
Location: 65752 - 66477 (-)
Gene ID: HRGMv2_1784_8_61
Type: TC
Location: 66484 - 67029 (-)
Gene ID: HRGMv2_1784_8_62
Type: TC
Location: 66998 - 67573 (-)
Gene ID: HRGMv2_1784_8_63
Type: pfam
Location: 67570 - 68136 (-)
Gene ID: HRGMv2_1784_8_64
Type: STP
Location: 68151 - 69137 (-)
Gene ID: HRGMv2_1784_8_65
Type: TC
Location: 69152 - 70129 (-)
Gene ID: HRGMv2_1784_8_66
Type: TC
Location: 70341 - 71159 (+)
Gene ID: HRGMv2_1784_8_67
Type: TC
Location: 71159 - 71941 (+)
Gene ID: HRGMv2_1784_8_68
Type: TC
Location: 71946 - 72497 (+)
Gene ID: HRGMv2_1784_8_69
Type: TC
Location: 72516 - 73151 (+)
Gene ID: HRGMv2_1784_8_70
Type: TC
Location: 73151 - 73441 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_8_66 vegetarian > vegan 1.37054 0.02661

🧭 Explore Read Mapping of CGC

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