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Cluster: HRGMv2_1784_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1784_1 HRGMv2_1784_1_44 48331 49317 + 3.A.1.2.9
TC HRGMv2_1784_1 HRGMv2_1784_1_45 49366 50877 + 3.A.1.2.9
TC HRGMv2_1784_1 HRGMv2_1784_1_46 50877 51881 + 3.A.1.2.9
TC HRGMv2_1784_1 HRGMv2_1784_1_47 51890 52882 + 3.A.1.2.8
pfam HRGMv2_1784_1 HRGMv2_1784_1_48 52955 54103 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
pfam HRGMv2_1784_1 HRGMv2_1784_1_49 54100 54414 + rhaM
TC HRGMv2_1784_1 HRGMv2_1784_1_50 54508 55815 - 2.A.1.5.4
CAZyme HRGMv2_1784_1 HRGMv2_1784_1_51 55815 57938 - GH36
TF HRGMv2_1784_1 HRGMv2_1784_1_52 58052 59047 - LacI
TF HRGMv2_1784_1 HRGMv2_1784_1_53 59143 59691 - HTH_3
TC HRGMv2_1784_1 HRGMv2_1784_1_54 59762 60451 + 2.A.78.2.3
TC HRGMv2_1784_1 HRGMv2_1784_1_55 60451 60774 + 2.A.78.2.3
NULL(UNKNOWN) HRGMv2_1784_1 HRGMv2_1784_1_56 60816 61370 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1784_1 HRGMv2_1784_1_57 61367 61804 - 4.A.7.1.1
NULL(UNKNOWN) HRGMv2_1784_1 HRGMv2_1784_1_58 61814 62083 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1784_1 HRGMv2_1784_1_59 62150 62992 - F_bP_aldolase
TC HRGMv2_1784_1 HRGMv2_1784_1_60 62979 64346 - 4.A.7.1.4
Gene ID: HRGMv2_1784_1_44
Type: TC
Location: 48331 - 49317 (+)
Gene ID: HRGMv2_1784_1_45
Type: TC
Location: 49366 - 50877 (+)
Gene ID: HRGMv2_1784_1_46
Type: TC
Location: 50877 - 51881 (+)
Gene ID: HRGMv2_1784_1_47
Type: TC
Location: 51890 - 52882 (+)
Gene ID: HRGMv2_1784_1_48
Type: pfam
Location: 52955 - 54103 (+)
Gene ID: HRGMv2_1784_1_49
Type: pfam
Location: 54100 - 54414 (+)
Gene ID: HRGMv2_1784_1_50
Type: TC
Location: 54508 - 55815 (-)
Gene ID: HRGMv2_1784_1_51
Type: CAZyme
Location: 55815 - 57938 (-)
Gene ID: HRGMv2_1784_1_52
Type: TF
Location: 58052 - 59047 (-)
Gene ID: HRGMv2_1784_1_53
Type: TF
Location: 59143 - 59691 (-)
Gene ID: HRGMv2_1784_1_54
Type: TC
Location: 59762 - 60451 (+)
Gene ID: HRGMv2_1784_1_55
Type: TC
Location: 60451 - 60774 (+)
Gene ID: HRGMv2_1784_1_56
Type:
Location: 60816 - 61370 (-)
Gene ID: HRGMv2_1784_1_57
Type: TC
Location: 61367 - 61804 (-)
Gene ID: HRGMv2_1784_1_58
Type:
Location: 61814 - 62083 (-)
Gene ID: HRGMv2_1784_1_59
Type: pfam
Location: 62150 - 62992 (-)
Gene ID: HRGMv2_1784_1_60
Type: TC
Location: 62979 - 64346 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1784_1_44 vegetarian > omnivore 2.31686 0.03840
HRGMv2_1784_1_45 vegetarian > omnivore 1.04959 0.03840
HRGMv2_1784_1_45 vegetarian > vegan 1.79682 0.04608
HRGMv2_1784_1_51 vegetarian > omnivore 1.36414 0.03840

🧭 Explore Read Mapping of CGC

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