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Cluster: HRGMv2_1783_CGC78

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_18 HRGMv2_1783_18_46 50443 51429 + 3.A.1.2.9
TC HRGMv2_1783_18 HRGMv2_1783_18_47 51574 53085 + 3.A.1.2.9
TC HRGMv2_1783_18 HRGMv2_1783_18_48 53085 54089 + 3.A.1.2.9
TC HRGMv2_1783_18 HRGMv2_1783_18_49 54086 55090 + 3.A.1.2.8
pfam HRGMv2_1783_18 HRGMv2_1783_18_50 55205 56353 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
pfam HRGMv2_1783_18 HRGMv2_1783_18_51 56350 56664 + rhaM
CAZyme HRGMv2_1783_18 HRGMv2_1783_18_52 56719 58083 - GH91
TC HRGMv2_1783_18 HRGMv2_1783_18_53 58178 59569 - 2.A.2.3.4
Gene ID: HRGMv2_1783_18_46
Type: TC
Location: 50443 - 51429 (+)
Gene ID: HRGMv2_1783_18_47
Type: TC
Location: 51574 - 53085 (+)
Gene ID: HRGMv2_1783_18_48
Type: TC
Location: 53085 - 54089 (+)
Gene ID: HRGMv2_1783_18_49
Type: TC
Location: 54086 - 55090 (+)
Gene ID: HRGMv2_1783_18_50
Type: pfam
Location: 55205 - 56353 (+)
Gene ID: HRGMv2_1783_18_51
Type: pfam
Location: 56350 - 56664 (+)
Gene ID: HRGMv2_1783_18_52
Type: CAZyme
Location: 56719 - 58083 (-)
Gene ID: HRGMv2_1783_18_53
Type: TC
Location: 58178 - 59569 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_18_46 vegetarian > vegan 1.24458 0.04914
HRGMv2_1783_18_48 vegetarian > vegan 1.25215 0.04626
HRGMv2_1783_18_50 vegan > omnivore 1.77535 0.03417
HRGMv2_1783_18_50 vegetarian > omnivore 1.18985 0.00290
HRGMv2_1783_18_51 vegetarian > omnivore 1.69155 0.00829

🧭 Explore Read Mapping of CGC

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