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Cluster: HRGMv2_1783_CGC71

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_15 HRGMv2_1783_15_66 69342 72140 + 3.A.23.1.1
TC HRGMv2_1783_15 HRGMv2_1783_15_67 72261 72686 + 4.A.6.1.17
TC HRGMv2_1783_15 HRGMv2_1783_15_68 72699 73184 + 4.A.6.1.17
TC HRGMv2_1783_15 HRGMv2_1783_15_69 73330 74079 + 4.A.6.1.17
TC HRGMv2_1783_15 HRGMv2_1783_15_70 74079 74936 + 4.A.6.1.17
pfam HRGMv2_1783_15 HRGMv2_1783_15_71 74940 76049 + SelA
pfam HRGMv2_1783_15 HRGMv2_1783_15_72 76036 76779 + KDGP_aldolase
TC HRGMv2_1783_15 HRGMv2_1783_15_73 76939 77598 - 1.C.113.1.10
pfam HRGMv2_1783_15 HRGMv2_1783_15_74 77760 78071 - ASCH
TF HRGMv2_1783_15 HRGMv2_1783_15_75 78095 78850 + HTH_6
CAZyme HRGMv2_1783_15 HRGMv2_1783_15_76 78972 80405 + GH1
Gene ID: HRGMv2_1783_15_66
Type: TC
Location: 69342 - 72140 (+)
Gene ID: HRGMv2_1783_15_67
Type: TC
Location: 72261 - 72686 (+)
Gene ID: HRGMv2_1783_15_68
Type: TC
Location: 72699 - 73184 (+)
Gene ID: HRGMv2_1783_15_69
Type: TC
Location: 73330 - 74079 (+)
Gene ID: HRGMv2_1783_15_70
Type: TC
Location: 74079 - 74936 (+)
Gene ID: HRGMv2_1783_15_71
Type: pfam
Location: 74940 - 76049 (+)
Gene ID: HRGMv2_1783_15_72
Type: pfam
Location: 76036 - 76779 (+)
Gene ID: HRGMv2_1783_15_73
Type: TC
Location: 76939 - 77598 (-)
Gene ID: HRGMv2_1783_15_74
Type: pfam
Location: 77760 - 78071 (-)
Gene ID: HRGMv2_1783_15_75
Type: TF
Location: 78095 - 78850 (+)
Gene ID: HRGMv2_1783_15_76
Type: CAZyme
Location: 78972 - 80405 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_15_75 vegetarian > vegan 1.19080 0.03225
HRGMv2_1783_15_76 vegan > omnivore 1.87046 0.00141

🧭 Explore Read Mapping of CGC

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