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Cluster: HRGMv2_1783_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_10 HRGMv2_1783_10_155 162167 162457 - 3.A.1.27.3
TC HRGMv2_1783_10 HRGMv2_1783_10_156 162457 163092 - 3.A.1.27.3
TC HRGMv2_1783_10 HRGMv2_1783_10_157 163111 163662 - 3.A.1.27.3
TC HRGMv2_1783_10 HRGMv2_1783_10_158 163667 164449 - 3.A.1.27.3
TC HRGMv2_1783_10 HRGMv2_1783_10_159 164457 165269 - 3.A.1.27.3
TC HRGMv2_1783_10 HRGMv2_1783_10_160 165479 166456 + 2.A.19.5.1
STP HRGMv2_1783_10 HRGMv2_1783_10_161 166471 167457 + CBS | CBS | SIS
pfam HRGMv2_1783_10 HRGMv2_1783_10_162 167472 168038 + Hydrolase_3
TC HRGMv2_1783_10 HRGMv2_1783_10_163 168035 168610 + 1.B.42.1.2
TC HRGMv2_1783_10 HRGMv2_1783_10_164 168579 169124 + 1.B.42.1.2
TC HRGMv2_1783_10 HRGMv2_1783_10_165 169131 169856 + 1.B.42.1.2
pfam HRGMv2_1783_10 HRGMv2_1783_10_166 169904 171337 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam HRGMv2_1783_10 HRGMv2_1783_10_167 171360 171647 + Ribosomal_S30AE
TC HRGMv2_1783_10 HRGMv2_1783_10_168 171713 172201 + 4.A.2.1.4
pfam HRGMv2_1783_10 HRGMv2_1783_10_169 172247 173101 + RapZ-like_N | PapZ_C
TC HRGMv2_1783_10 HRGMv2_1783_10_170 173098 173370 + 8.A.8.1.5
CAZyme HRGMv2_1783_10 HRGMv2_1783_10_171 173420 174148 - GT51
Gene ID: HRGMv2_1783_10_155
Type: TC
Location: 162167 - 162457 (-)
Gene ID: HRGMv2_1783_10_156
Type: TC
Location: 162457 - 163092 (-)
Gene ID: HRGMv2_1783_10_157
Type: TC
Location: 163111 - 163662 (-)
Gene ID: HRGMv2_1783_10_158
Type: TC
Location: 163667 - 164449 (-)
Gene ID: HRGMv2_1783_10_159
Type: TC
Location: 164457 - 165269 (-)
Gene ID: HRGMv2_1783_10_160
Type: TC
Location: 165479 - 166456 (+)
Gene ID: HRGMv2_1783_10_161
Type: STP
Location: 166471 - 167457 (+)
Gene ID: HRGMv2_1783_10_162
Type: pfam
Location: 167472 - 168038 (+)
Gene ID: HRGMv2_1783_10_163
Type: TC
Location: 168035 - 168610 (+)
Gene ID: HRGMv2_1783_10_164
Type: TC
Location: 168579 - 169124 (+)
Gene ID: HRGMv2_1783_10_165
Type: TC
Location: 169131 - 169856 (+)
Gene ID: HRGMv2_1783_10_166
Type: pfam
Location: 169904 - 171337 (+)
Gene ID: HRGMv2_1783_10_167
Type: pfam
Location: 171360 - 171647 (+)
Gene ID: HRGMv2_1783_10_168
Type: TC
Location: 171713 - 172201 (+)
Gene ID: HRGMv2_1783_10_169
Type: pfam
Location: 172247 - 173101 (+)
Gene ID: HRGMv2_1783_10_170
Type: TC
Location: 173098 - 173370 (+)
Gene ID: HRGMv2_1783_10_171
Type: CAZyme
Location: 173420 - 174148 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_10_159 vegetarian > omnivore 1.21258 0.04863
HRGMv2_1783_10_159 vegetarian > vegan 1.57113 0.04626

🧭 Explore Read Mapping of CGC

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