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Cluster: HRGMv2_1783_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_1 HRGMv2_1783_1_388 429767 430510 - 9.B.158.1.2
pfam HRGMv2_1783_1 HRGMv2_1783_1_389 430587 431156 - YecM
pfam HRGMv2_1783_1 HRGMv2_1783_1_390 431387 433120 + tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1
CAZyme HRGMv2_1783_1 HRGMv2_1783_1_391 433241 434380 - GH105
TC HRGMv2_1783_1 HRGMv2_1783_1_392 434385 435968 - 2.A.2.5.2
pfam HRGMv2_1783_1 HRGMv2_1783_1_393 436333 436761 + Usp
CAZyme HRGMv2_1783_1 HRGMv2_1783_1_394 436788 438212 - GT20
pfam HRGMv2_1783_1 HRGMv2_1783_1_395 438187 438990 - Trehalose_PPase
TC HRGMv2_1783_1 HRGMv2_1783_1_396 439149 440129 - 3.A.1.2.2
TC HRGMv2_1783_1 HRGMv2_1783_1_397 440144 441658 - 3.A.1.2.2
TC HRGMv2_1783_1 HRGMv2_1783_1_398 441720 442700 - 3.A.1.2.2
peptidase HRGMv2_1783_1 HRGMv2_1783_1_399 442989 443546 - C56.UNW
pfam HRGMv2_1783_1 HRGMv2_1783_1_400 444047 444550 + Ferritin
TC HRGMv2_1783_1 HRGMv2_1783_1_401 444824 446386 + 2.A.2.5.1
pfam HRGMv2_1783_1 HRGMv2_1783_1_402 446433 446684 - DUF2766
TC HRGMv2_1783_1 HRGMv2_1783_1_403 446994 448475 + 2.A.1.3.51
Gene ID: HRGMv2_1783_1_388
Type: TC
Location: 429767 - 430510 (-)
Gene ID: HRGMv2_1783_1_389
Type: pfam
Location: 430587 - 431156 (-)
Gene ID: HRGMv2_1783_1_390
Type: pfam
Location: 431387 - 433120 (+)
Gene ID: HRGMv2_1783_1_391
Type: CAZyme
Location: 433241 - 434380 (-)
Gene ID: HRGMv2_1783_1_392
Type: TC
Location: 434385 - 435968 (-)
Gene ID: HRGMv2_1783_1_393
Type: pfam
Location: 436333 - 436761 (+)
Gene ID: HRGMv2_1783_1_394
Type: CAZyme
Location: 436788 - 438212 (-)
Gene ID: HRGMv2_1783_1_395
Type: pfam
Location: 438187 - 438990 (-)
Gene ID: HRGMv2_1783_1_396
Type: TC
Location: 439149 - 440129 (-)
Gene ID: HRGMv2_1783_1_397
Type: TC
Location: 440144 - 441658 (-)
Gene ID: HRGMv2_1783_1_398
Type: TC
Location: 441720 - 442700 (-)
Gene ID: HRGMv2_1783_1_399
Type: peptidase
Location: 442989 - 443546 (-)
Gene ID: HRGMv2_1783_1_400
Type: pfam
Location: 444047 - 444550 (+)
Gene ID: HRGMv2_1783_1_401
Type: TC
Location: 444824 - 446386 (+)
Gene ID: HRGMv2_1783_1_402
Type: pfam
Location: 446433 - 446684 (-)
Gene ID: HRGMv2_1783_1_403
Type: TC
Location: 446994 - 448475 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_1_391 vegetarian > omnivore 1.50942 0.02053
HRGMv2_1783_1_391 vegetarian > vegan 1.64326 0.03225
HRGMv2_1783_1_392 vegetarian > omnivore 2.57590 0.01127
HRGMv2_1783_1_396 vegetarian > vegan 2.26465 0.04626

🧭 Explore Read Mapping of CGC

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