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Cluster: HRGMv2_1783_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_8 HRGMv2_1783_8_229 242312 242920 + 3.D.1.9.2
TC HRGMv2_1783_8 HRGMv2_1783_8_230 242917 244743 + 3.D.1.9.2
TC HRGMv2_1783_8 HRGMv2_1783_8_231 244746 245669 + 3.D.1.9.2
TC HRGMv2_1783_8 HRGMv2_1783_8_232 245687 247396 + 3.D.1.9.2
TC HRGMv2_1783_8 HRGMv2_1783_8_233 247406 247948 + 3.D.1.9.2
TC HRGMv2_1783_8 HRGMv2_1783_8_234 247948 248715 + 3.D.1.9.2
pfam HRGMv2_1783_8 HRGMv2_1783_8_235 248712 249122 + HycH
peptidase HRGMv2_1783_8 HRGMv2_1783_8_236 249115 249600 + A31.003
CAZyme HRGMv2_1783_8 HRGMv2_1783_8_237 249796 251220 - GH1
TC HRGMv2_1783_8 HRGMv2_1783_8_238 251247 252689 - 4.A.1.2.3
TF HRGMv2_1783_8 HRGMv2_1783_8_239 252946 253959 + LacI
TC HRGMv2_1783_8 HRGMv2_1783_8_240 254094 254621 + 5.A.3.3.1
pfam HRGMv2_1783_8 HRGMv2_1783_8_241 254634 256853 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC HRGMv2_1783_8 HRGMv2_1783_8_242 256865 257875 + 2.A.52.1.1
Gene ID: HRGMv2_1783_8_229
Type: TC
Location: 242312 - 242920 (+)
Gene ID: HRGMv2_1783_8_230
Type: TC
Location: 242917 - 244743 (+)
Gene ID: HRGMv2_1783_8_231
Type: TC
Location: 244746 - 245669 (+)
Gene ID: HRGMv2_1783_8_232
Type: TC
Location: 245687 - 247396 (+)
Gene ID: HRGMv2_1783_8_233
Type: TC
Location: 247406 - 247948 (+)
Gene ID: HRGMv2_1783_8_234
Type: TC
Location: 247948 - 248715 (+)
Gene ID: HRGMv2_1783_8_235
Type: pfam
Location: 248712 - 249122 (+)
Gene ID: HRGMv2_1783_8_236
Type: peptidase
Location: 249115 - 249600 (+)
Gene ID: HRGMv2_1783_8_237
Type: CAZyme
Location: 249796 - 251220 (-)
Gene ID: HRGMv2_1783_8_238
Type: TC
Location: 251247 - 252689 (-)
Gene ID: HRGMv2_1783_8_239
Type: TF
Location: 252946 - 253959 (+)
Gene ID: HRGMv2_1783_8_240
Type: TC
Location: 254094 - 254621 (+)
Gene ID: HRGMv2_1783_8_241
Type: pfam
Location: 254634 - 256853 (+)
Gene ID: HRGMv2_1783_8_242
Type: TC
Location: 256865 - 257875 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_8_237 vegan > omnivore 1.21765 0.04176
HRGMv2_1783_8_239 vegetarian > omnivore 1.72108 0.03838

🧭 Explore Read Mapping of CGC

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