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Cluster: HRGMv2_1783_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_8 HRGMv2_1783_8_17 14280 15509 - 2.A.42.2.5
TC HRGMv2_1783_8 HRGMv2_1783_8_18 15646 16107 - 2.A.117.1.3
TF HRGMv2_1783_8 HRGMv2_1783_8_19 16204 17076 + HTH_1
pfam HRGMv2_1783_8 HRGMv2_1783_8_20 17207 18385 + Thiolase_N | ketoacyl-synt | Thiolase_C
TC HRGMv2_1783_8 HRGMv2_1783_8_21 18629 19324 + 1.B.35.1.7
CAZyme HRGMv2_1783_8 HRGMv2_1783_8_22 19555 20730 - PL22 | PL22
pfam HRGMv2_1783_8 HRGMv2_1783_8_23 21274 22035 + adh_short | adh_short_C2
TC HRGMv2_1783_8 HRGMv2_1783_8_24 22347 23765 + 2.A.1.1.2
TF HRGMv2_1783_8 HRGMv2_1783_8_25 23766 24761 - LacI
TC HRGMv2_1783_8 HRGMv2_1783_8_26 25002 26243 + 2.A.1.5.2
CAZyme HRGMv2_1783_8 HRGMv2_1783_8_27 26262 27695 + GH32
TC HRGMv2_1783_8 HRGMv2_1783_8_28 27817 29163 + 1.B.15.1.1
CAZyme HRGMv2_1783_8 HRGMv2_1783_8_29 29274 30401 - PL22 | PL22_1
TC HRGMv2_1783_8 HRGMv2_1783_8_30 30472 31758 - 3.A.1.1.11
TC HRGMv2_1783_8 HRGMv2_1783_8_31 31775 32902 - 3.A.1.1.11
TC HRGMv2_1783_8 HRGMv2_1783_8_32 32915 33817 - 3.A.1.1.11
TC HRGMv2_1783_8 HRGMv2_1783_8_33 33810 34700 - 3.A.1.1.11
Gene ID: HRGMv2_1783_8_17
Type: TC
Location: 14280 - 15509 (-)
Gene ID: HRGMv2_1783_8_18
Type: TC
Location: 15646 - 16107 (-)
Gene ID: HRGMv2_1783_8_19
Type: TF
Location: 16204 - 17076 (+)
Gene ID: HRGMv2_1783_8_20
Type: pfam
Location: 17207 - 18385 (+)
Gene ID: HRGMv2_1783_8_21
Type: TC
Location: 18629 - 19324 (+)
Gene ID: HRGMv2_1783_8_22
Type: CAZyme
Location: 19555 - 20730 (-)
Gene ID: HRGMv2_1783_8_23
Type: pfam
Location: 21274 - 22035 (+)
Gene ID: HRGMv2_1783_8_24
Type: TC
Location: 22347 - 23765 (+)
Gene ID: HRGMv2_1783_8_25
Type: TF
Location: 23766 - 24761 (-)
Gene ID: HRGMv2_1783_8_26
Type: TC
Location: 25002 - 26243 (+)
Gene ID: HRGMv2_1783_8_27
Type: CAZyme
Location: 26262 - 27695 (+)
Gene ID: HRGMv2_1783_8_28
Type: TC
Location: 27817 - 29163 (+)
Gene ID: HRGMv2_1783_8_29
Type: CAZyme
Location: 29274 - 30401 (-)
Gene ID: HRGMv2_1783_8_30
Type: TC
Location: 30472 - 31758 (-)
Gene ID: HRGMv2_1783_8_31
Type: TC
Location: 31775 - 32902 (-)
Gene ID: HRGMv2_1783_8_32
Type: TC
Location: 32915 - 33817 (-)
Gene ID: HRGMv2_1783_8_33
Type: TC
Location: 33810 - 34700 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_8_22 vegetarian > vegan 1.96993 0.04626
HRGMv2_1783_8_31 vegetarian > omnivore 1.23839 0.00561

🧭 Explore Read Mapping of CGC

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