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Cluster: HRGMv2_1783_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_6 HRGMv2_1783_6_226 234676 235935 + 2.A.3.13.1
pfam HRGMv2_1783_6 HRGMv2_1783_6_227 235955 236431 - FxsA
pfam HRGMv2_1783_6 HRGMv2_1783_6_228 236770 238206 + Lyase_1 | FumaraseC_C
TC HRGMv2_1783_6 HRGMv2_1783_6_229 238325 239626 + 2.A.13.1.1
pfam HRGMv2_1783_6 HRGMv2_1783_6_230 239721 240044 + CutA1
TC HRGMv2_1783_6 HRGMv2_1783_6_231 240020 241783 + 5.A.1.1.1
NULL(UNKNOWN) HRGMv2_1783_6 HRGMv2_1783_6_232 241810 242400 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1783_6 HRGMv2_1783_6_233 242469 244556 + DUF1176
CAZyme HRGMv2_1783_6 HRGMv2_1783_6_234 245212 247434 - GT2
pfam HRGMv2_1783_6 HRGMv2_1783_6_235 247534 248343 + PS_pyruv_trans
NULL(UNKNOWN) HRGMv2_1783_6 HRGMv2_1783_6_236 248379 248813 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1783_6 HRGMv2_1783_6_237 248921 249508 - 2.A.37.1.1
STP HRGMv2_1783_6 HRGMv2_1783_6_238 249624 250220 + TetR_N
pfam HRGMv2_1783_6 HRGMv2_1783_6_239 250254 251036 - DSBA | Thioredoxin_4 | ScsC_N
TC HRGMv2_1783_6 HRGMv2_1783_6_240 251260 251940 + 2.A.109.1.5
pfam HRGMv2_1783_6 HRGMv2_1783_6_241 252091 253011 + DnaJ | DnaJ_C
pfam HRGMv2_1783_6 HRGMv2_1783_6_242 253011 253316 + MerR_2
TC HRGMv2_1783_6 HRGMv2_1783_6_243 253462 254964 - 2.A.1.6.4
Gene ID: HRGMv2_1783_6_226
Type: TC
Location: 234676 - 235935 (+)
Gene ID: HRGMv2_1783_6_227
Type: pfam
Location: 235955 - 236431 (-)
Gene ID: HRGMv2_1783_6_228
Type: pfam
Location: 236770 - 238206 (+)
Gene ID: HRGMv2_1783_6_229
Type: TC
Location: 238325 - 239626 (+)
Gene ID: HRGMv2_1783_6_230
Type: pfam
Location: 239721 - 240044 (+)
Gene ID: HRGMv2_1783_6_231
Type: TC
Location: 240020 - 241783 (+)
Gene ID: HRGMv2_1783_6_232
Type:
Location: 241810 - 242400 (+)
Gene ID: HRGMv2_1783_6_233
Type: pfam
Location: 242469 - 244556 (+)
Gene ID: HRGMv2_1783_6_234
Type: CAZyme
Location: 245212 - 247434 (-)
Gene ID: HRGMv2_1783_6_235
Type: pfam
Location: 247534 - 248343 (+)
Gene ID: HRGMv2_1783_6_236
Type:
Location: 248379 - 248813 (-)
Gene ID: HRGMv2_1783_6_237
Type: TC
Location: 248921 - 249508 (-)
Gene ID: HRGMv2_1783_6_238
Type: STP
Location: 249624 - 250220 (+)
Gene ID: HRGMv2_1783_6_239
Type: pfam
Location: 250254 - 251036 (-)
Gene ID: HRGMv2_1783_6_240
Type: TC
Location: 251260 - 251940 (+)
Gene ID: HRGMv2_1783_6_241
Type: pfam
Location: 252091 - 253011 (+)
Gene ID: HRGMv2_1783_6_242
Type: pfam
Location: 253011 - 253316 (+)
Gene ID: HRGMv2_1783_6_243
Type: TC
Location: 253462 - 254964 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_6_227 vegan > omnivore 2.52349 0.04865
HRGMv2_1783_6_227 vegetarian > omnivore 2.57640 0.01127

🧭 Explore Read Mapping of CGC

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