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Cluster: HRGMv2_1783_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1783_6 HRGMv2_1783_6_105 104437 105900 + AA10 | CBM73
pfam HRGMv2_1783_6 HRGMv2_1783_6_106 106054 106440 + Ribonuc_L-PSP
TC HRGMv2_1783_6 HRGMv2_1783_6_107 106508 109216 - 3.A.3.4.1
TF HRGMv2_1783_6 HRGMv2_1783_6_108 109595 110542 + LacI
TC HRGMv2_1783_6 HRGMv2_1783_6_109 110671 112089 + 4.A.1.2.4
CAZyme HRGMv2_1783_6 HRGMv2_1783_6_110 112143 113798 + GH13_29
TC HRGMv2_1783_6 HRGMv2_1783_6_111 113923 115278 - 4.A.3.2.2
CAZyme HRGMv2_1783_6 HRGMv2_1783_6_112 115305 116612 - GH4
TC HRGMv2_1783_6 HRGMv2_1783_6_113 116692 117000 - 4.A.3.2.9
Gene ID: HRGMv2_1783_6_105
Type: CAZyme
Location: 104437 - 105900 (+)
Gene ID: HRGMv2_1783_6_106
Type: pfam
Location: 106054 - 106440 (+)
Gene ID: HRGMv2_1783_6_107
Type: TC
Location: 106508 - 109216 (-)
Gene ID: HRGMv2_1783_6_108
Type: TF
Location: 109595 - 110542 (+)
Gene ID: HRGMv2_1783_6_109
Type: TC
Location: 110671 - 112089 (+)
Gene ID: HRGMv2_1783_6_110
Type: CAZyme
Location: 112143 - 113798 (+)
Gene ID: HRGMv2_1783_6_111
Type: TC
Location: 113923 - 115278 (-)
Gene ID: HRGMv2_1783_6_112
Type: CAZyme
Location: 115305 - 116612 (-)
Gene ID: HRGMv2_1783_6_113
Type: TC
Location: 116692 - 117000 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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