Cluster: HRGMv2_1783_CGC27
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1783
- CGC Family ID: CGCFAM_00123
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1783_3 | HRGMv2_1783_3_290 | 321477 | 322817 | + | 2.A.8.1.8 |
| pfam | HRGMv2_1783_3 | HRGMv2_1783_3_291 | 323268 | 324374 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | HRGMv2_1783_3 | HRGMv2_1783_3_292 | 324622 | 326808 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_1783_3 | HRGMv2_1783_3_293 | 326805 | 328781 | + | CBM48 | GH13_11 |
| pfam | HRGMv2_1783_3 | HRGMv2_1783_3_294 | 328862 | 330157 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1783_3 | HRGMv2_1783_3_295 | 330157 | 331590 | + | GT5 |
| CAZyme | HRGMv2_1783_3 | HRGMv2_1783_3_296 | 331606 | 334053 | + | GT35 |
| pfam | HRGMv2_1783_3 | HRGMv2_1783_3_297 | 334105 | 335613 | - | DAO | DAO_C |
| STP | HRGMv2_1783_3 | HRGMv2_1783_3_298 | 335826 | 336155 | + | Rhodanese |
| TC | HRGMv2_1783_3 | HRGMv2_1783_3_299 | 336221 | 337045 | + | 9.B.104.1.1 |
| TF | HRGMv2_1783_3 | HRGMv2_1783_3_300 | 337065 | 337823 | + | HTH_DeoR |
| TF | HRGMv2_1783_3 | HRGMv2_1783_3_301 | 337989 | 340694 | - | GerE |
| CAZyme | HRGMv2_1783_3 | HRGMv2_1783_3_302 | 341315 | 343705 | + | GT35 |
| CAZyme | HRGMv2_1783_3 | HRGMv2_1783_3_303 | 343716 | 345809 | + | GH77 |
Gene ID: HRGMv2_1783_3_290
Type: TC
Location: 321477 - 322817 (+)
Type: TC
Location: 321477 - 322817 (+)
Gene ID: HRGMv2_1783_3_291
Type: pfam
Location: 323268 - 324374 (+)
Type: pfam
Location: 323268 - 324374 (+)
Gene ID: HRGMv2_1783_3_292
Type: CAZyme
Location: 324622 - 326808 (+)
Type: CAZyme
Location: 324622 - 326808 (+)
Gene ID: HRGMv2_1783_3_293
Type: CAZyme
Location: 326805 - 328781 (+)
Type: CAZyme
Location: 326805 - 328781 (+)
Gene ID: HRGMv2_1783_3_294
Type: pfam
Location: 328862 - 330157 (+)
Type: pfam
Location: 328862 - 330157 (+)
Gene ID: HRGMv2_1783_3_295
Type: CAZyme
Location: 330157 - 331590 (+)
Type: CAZyme
Location: 330157 - 331590 (+)
Gene ID: HRGMv2_1783_3_296
Type: CAZyme
Location: 331606 - 334053 (+)
Type: CAZyme
Location: 331606 - 334053 (+)
Gene ID: HRGMv2_1783_3_297
Type: pfam
Location: 334105 - 335613 (-)
Type: pfam
Location: 334105 - 335613 (-)
Gene ID: HRGMv2_1783_3_298
Type: STP
Location: 335826 - 336155 (+)
Type: STP
Location: 335826 - 336155 (+)
Gene ID: HRGMv2_1783_3_299
Type: TC
Location: 336221 - 337045 (+)
Type: TC
Location: 336221 - 337045 (+)
Gene ID: HRGMv2_1783_3_300
Type: TF
Location: 337065 - 337823 (+)
Type: TF
Location: 337065 - 337823 (+)
Gene ID: HRGMv2_1783_3_301
Type: TF
Location: 337989 - 340694 (-)
Type: TF
Location: 337989 - 340694 (-)
Gene ID: HRGMv2_1783_3_302
Type: CAZyme
Location: 341315 - 343705 (+)
Type: CAZyme
Location: 341315 - 343705 (+)
Gene ID: HRGMv2_1783_3_303
Type: CAZyme
Location: 343716 - 345809 (+)
Type: CAZyme
Location: 343716 - 345809 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.