dbCAN Logo

Cluster: HRGMv2_1783_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1783_3 HRGMv2_1783_3_34 33661 35055 + 2.A.2.3.4
CAZyme HRGMv2_1783_3 HRGMv2_1783_3_35 35069 37387 + GH31_3
TF HRGMv2_1783_3 HRGMv2_1783_3_36 37815 39386 + HTH_11 | Mga
TC HRGMv2_1783_3 HRGMv2_1783_3_37 39397 39867 + 4.A.2.1.9
TC HRGMv2_1783_3 HRGMv2_1783_3_38 39889 40203 + 4.A.2.1.9
TC HRGMv2_1783_3 HRGMv2_1783_3_39 40227 41318 + 4.A.2.1.9
Gene ID: HRGMv2_1783_3_34
Type: TC
Location: 33661 - 35055 (+)
Gene ID: HRGMv2_1783_3_35
Type: CAZyme
Location: 35069 - 37387 (+)
Gene ID: HRGMv2_1783_3_36
Type: TF
Location: 37815 - 39386 (+)
Gene ID: HRGMv2_1783_3_37
Type: TC
Location: 39397 - 39867 (+)
Gene ID: HRGMv2_1783_3_38
Type: TC
Location: 39889 - 40203 (+)
Gene ID: HRGMv2_1783_3_39
Type: TC
Location: 40227 - 41318 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1783_3_35 vegetarian > vegan 1.05400 0.00912

🧭 Explore Read Mapping of CGC

← Back to Cluster List