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Cluster: HRGMv2_1781_CGC82

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_23 HRGMv2_1781_23_48 51238 51852 + 2.A.115.2.6
TC HRGMv2_1781_23 HRGMv2_1781_23_49 51945 52298 + 3.A.5.1.1
TC HRGMv2_1781_23 HRGMv2_1781_23_50 52345 53172 - 2.A.113.1.1
pfam HRGMv2_1781_23 HRGMv2_1781_23_51 53339 53611 + Trns_repr_metal
STP HRGMv2_1781_23 HRGMv2_1781_23_52 53614 55200 - EAL
TC HRGMv2_1781_23 HRGMv2_1781_23_53 55444 56553 - 3.A.1.1.4
TC HRGMv2_1781_23 HRGMv2_1781_23_54 56907 58139 + 3.A.1.1.2
TC HRGMv2_1781_23 HRGMv2_1781_23_55 58196 59503 + 3.A.1.1.2
TC HRGMv2_1781_23 HRGMv2_1781_23_56 59514 60365 + 3.A.1.1.2
CAZyme HRGMv2_1781_23 HRGMv2_1781_23_57 60370 61572 + GH53
CAZyme HRGMv2_1781_23 HRGMv2_1781_23_58 61604 63661 + GH42
TC HRGMv2_1781_23 HRGMv2_1781_23_59 63727 64041 + 4.A.1.1.1
TC HRGMv2_1781_23 HRGMv2_1781_23_60 64165 65436 - 1.B.3.1.1
Gene ID: HRGMv2_1781_23_48
Type: TC
Location: 51238 - 51852 (+)
Gene ID: HRGMv2_1781_23_49
Type: TC
Location: 51945 - 52298 (+)
Gene ID: HRGMv2_1781_23_50
Type: TC
Location: 52345 - 53172 (-)
Gene ID: HRGMv2_1781_23_51
Type: pfam
Location: 53339 - 53611 (+)
Gene ID: HRGMv2_1781_23_52
Type: STP
Location: 53614 - 55200 (-)
Gene ID: HRGMv2_1781_23_53
Type: TC
Location: 55444 - 56553 (-)
Gene ID: HRGMv2_1781_23_54
Type: TC
Location: 56907 - 58139 (+)
Gene ID: HRGMv2_1781_23_55
Type: TC
Location: 58196 - 59503 (+)
Gene ID: HRGMv2_1781_23_56
Type: TC
Location: 59514 - 60365 (+)
Gene ID: HRGMv2_1781_23_57
Type: CAZyme
Location: 60370 - 61572 (+)
Gene ID: HRGMv2_1781_23_58
Type: CAZyme
Location: 61604 - 63661 (+)
Gene ID: HRGMv2_1781_23_59
Type: TC
Location: 63727 - 64041 (+)
Gene ID: HRGMv2_1781_23_60
Type: TC
Location: 64165 - 65436 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_23_51 vegetarian > omnivore 15.41539 0.00744

🧭 Explore Read Mapping of CGC

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