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Cluster: HRGMv2_1781_CGC79

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_21 HRGMv2_1781_21_75 76605 77495 + 3.A.1.1.11
TC HRGMv2_1781_21 HRGMv2_1781_21_76 77488 78390 + 3.A.1.1.11
TC HRGMv2_1781_21 HRGMv2_1781_21_77 78403 79530 + 3.A.1.1.11
TC HRGMv2_1781_21 HRGMv2_1781_21_78 79547 80833 + 3.A.1.1.11
CAZyme HRGMv2_1781_21 HRGMv2_1781_21_79 80905 82032 + PL22 | PL22_1
TC HRGMv2_1781_21 HRGMv2_1781_21_80 82356 83699 - 1.B.15.1.1
CAZyme HRGMv2_1781_21 HRGMv2_1781_21_81 83812 85245 - GH32
TC HRGMv2_1781_21 HRGMv2_1781_21_82 85264 86505 - 2.A.1.5.2
TF HRGMv2_1781_21 HRGMv2_1781_21_83 86746 87741 + LacI
TC HRGMv2_1781_21 HRGMv2_1781_21_84 87742 89160 - 2.A.1.1.2
pfam HRGMv2_1781_21 HRGMv2_1781_21_85 89472 90233 - adh_short | adh_short_C2
CAZyme HRGMv2_1781_21 HRGMv2_1781_21_86 90776 91951 + PL22 | PL22
TC HRGMv2_1781_21 HRGMv2_1781_21_87 92183 92878 - 1.B.35.1.7
pfam HRGMv2_1781_21 HRGMv2_1781_21_88 93123 94298 - Thiolase_N | ketoacyl-synt | Thiolase_C
TF HRGMv2_1781_21 HRGMv2_1781_21_89 94429 95301 - HTH_1
TC HRGMv2_1781_21 HRGMv2_1781_21_90 95398 95886 + 2.A.117.1.3
TC HRGMv2_1781_21 HRGMv2_1781_21_91 95997 97226 + 2.A.42.2.5
Gene ID: HRGMv2_1781_21_75
Type: TC
Location: 76605 - 77495 (+)
Gene ID: HRGMv2_1781_21_76
Type: TC
Location: 77488 - 78390 (+)
Gene ID: HRGMv2_1781_21_77
Type: TC
Location: 78403 - 79530 (+)
Gene ID: HRGMv2_1781_21_78
Type: TC
Location: 79547 - 80833 (+)
Gene ID: HRGMv2_1781_21_79
Type: CAZyme
Location: 80905 - 82032 (+)
Gene ID: HRGMv2_1781_21_80
Type: TC
Location: 82356 - 83699 (-)
Gene ID: HRGMv2_1781_21_81
Type: CAZyme
Location: 83812 - 85245 (-)
Gene ID: HRGMv2_1781_21_82
Type: TC
Location: 85264 - 86505 (-)
Gene ID: HRGMv2_1781_21_83
Type: TF
Location: 86746 - 87741 (+)
Gene ID: HRGMv2_1781_21_84
Type: TC
Location: 87742 - 89160 (-)
Gene ID: HRGMv2_1781_21_85
Type: pfam
Location: 89472 - 90233 (-)
Gene ID: HRGMv2_1781_21_86
Type: CAZyme
Location: 90776 - 91951 (+)
Gene ID: HRGMv2_1781_21_87
Type: TC
Location: 92183 - 92878 (-)
Gene ID: HRGMv2_1781_21_88
Type: pfam
Location: 93123 - 94298 (-)
Gene ID: HRGMv2_1781_21_89
Type: TF
Location: 94429 - 95301 (-)
Gene ID: HRGMv2_1781_21_90
Type: TC
Location: 95398 - 95886 (+)
Gene ID: HRGMv2_1781_21_91
Type: TC
Location: 95997 - 97226 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_21_77 vegetarian > omnivore 1.14958 0.01730
HRGMv2_1781_21_78 vegetarian > omnivore 1.59535 0.04336
HRGMv2_1781_21_86 vegetarian > omnivore 1.39220 0.04336
HRGMv2_1781_21_86 vegetarian > vegan 2.87643 0.03091
HRGMv2_1781_21_91 vegetarian > omnivore 1.51622 0.04703

🧭 Explore Read Mapping of CGC

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