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Cluster: HRGMv2_1781_CGC76

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_20 HRGMv2_1781_20_28 29744 31591 + 9.B.22.2.1
TC HRGMv2_1781_20 HRGMv2_1781_20_29 31836 33422 - 2.A.109.2.3
pfam HRGMv2_1781_20 HRGMv2_1781_20_30 34432 35280 + NTP_transferase
pfam HRGMv2_1781_20 HRGMv2_1781_20_31 35740 36369 + PAP2
TC HRGMv2_1781_20 HRGMv2_1781_20_32 37367 38806 + 1.B.73.1.1
TC HRGMv2_1781_20 HRGMv2_1781_20_33 38878 40017 + 1.B.18.3.8
TC HRGMv2_1781_20 HRGMv2_1781_20_34 40470 42638 + 8.A.3.3.1
CAZyme HRGMv2_1781_20 HRGMv2_1781_20_35 42735 43727 + GT4
CAZyme HRGMv2_1781_20 HRGMv2_1781_20_36 43743 44708 + GT2
pfam HRGMv2_1781_20 HRGMv2_1781_20_37 44751 45716 + EpsG
CAZyme HRGMv2_1781_20 HRGMv2_1781_20_38 45757 46497 + GT25
pfam HRGMv2_1781_20 HRGMv2_1781_20_39 46556 47980 + NTP_transferase | MannoseP_isomer | Cupin_2 | ManC_GMP_beta-helix
pfam HRGMv2_1781_20 HRGMv2_1781_20_40 47997 49373 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_1781_20 HRGMv2_1781_20_41 49453 50604 + GT4
TC HRGMv2_1781_20 HRGMv2_1781_20_42 50752 52182 + 9.B.18.1.2
CAZyme HRGMv2_1781_20 HRGMv2_1781_20_43 52217 53230 + GH39
Gene ID: HRGMv2_1781_20_28
Type: TC
Location: 29744 - 31591 (+)
Gene ID: HRGMv2_1781_20_29
Type: TC
Location: 31836 - 33422 (-)
Gene ID: HRGMv2_1781_20_30
Type: pfam
Location: 34432 - 35280 (+)
Gene ID: HRGMv2_1781_20_31
Type: pfam
Location: 35740 - 36369 (+)
Gene ID: HRGMv2_1781_20_32
Type: TC
Location: 37367 - 38806 (+)
Gene ID: HRGMv2_1781_20_33
Type: TC
Location: 38878 - 40017 (+)
Gene ID: HRGMv2_1781_20_34
Type: TC
Location: 40470 - 42638 (+)
Gene ID: HRGMv2_1781_20_35
Type: CAZyme
Location: 42735 - 43727 (+)
Gene ID: HRGMv2_1781_20_36
Type: CAZyme
Location: 43743 - 44708 (+)
Gene ID: HRGMv2_1781_20_37
Type: pfam
Location: 44751 - 45716 (+)
Gene ID: HRGMv2_1781_20_38
Type: CAZyme
Location: 45757 - 46497 (+)
Gene ID: HRGMv2_1781_20_39
Type: pfam
Location: 46556 - 47980 (+)
Gene ID: HRGMv2_1781_20_40
Type: pfam
Location: 47997 - 49373 (+)
Gene ID: HRGMv2_1781_20_41
Type: CAZyme
Location: 49453 - 50604 (+)
Gene ID: HRGMv2_1781_20_42
Type: TC
Location: 50752 - 52182 (+)
Gene ID: HRGMv2_1781_20_43
Type: CAZyme
Location: 52217 - 53230 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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