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Cluster: HRGMv2_1781_CGC73

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_19 HRGMv2_1781_19_45 49389 50375 + 3.A.1.2.9
TC HRGMv2_1781_19 HRGMv2_1781_19_46 50472 51983 + 3.A.1.2.9
TC HRGMv2_1781_19 HRGMv2_1781_19_47 51983 52987 + 3.A.1.2.9
TC HRGMv2_1781_19 HRGMv2_1781_19_48 52984 53988 + 3.A.1.2.8
pfam HRGMv2_1781_19 HRGMv2_1781_19_49 54137 55285 + Fe-ADH | ADH_Fe_C
pfam HRGMv2_1781_19 HRGMv2_1781_19_50 55282 55596 + rhaM
CAZyme HRGMv2_1781_19 HRGMv2_1781_19_51 55651 57015 - GH91
TC HRGMv2_1781_19 HRGMv2_1781_19_52 57112 58500 - 2.A.2.3.4
TF HRGMv2_1781_19 HRGMv2_1781_19_53 58570 59580 - LacI
TC HRGMv2_1781_19 HRGMv2_1781_19_54 59887 61266 - 1.B.15.1.1
pfam HRGMv2_1781_19 HRGMv2_1781_19_55 61371 61961 - Hexapep | Mac | Hexapep_2
TC HRGMv2_1781_19 HRGMv2_1781_19_56 62017 63282 - 2.A.1.5.4
CAZyme HRGMv2_1781_19 HRGMv2_1781_19_57 63324 65447 - GH36
TF HRGMv2_1781_19 HRGMv2_1781_19_58 65562 66557 - LacI
TC HRGMv2_1781_19 HRGMv2_1781_19_59 66664 67941 - 2.A.1.14.33
Gene ID: HRGMv2_1781_19_45
Type: TC
Location: 49389 - 50375 (+)
Gene ID: HRGMv2_1781_19_46
Type: TC
Location: 50472 - 51983 (+)
Gene ID: HRGMv2_1781_19_47
Type: TC
Location: 51983 - 52987 (+)
Gene ID: HRGMv2_1781_19_48
Type: TC
Location: 52984 - 53988 (+)
Gene ID: HRGMv2_1781_19_49
Type: pfam
Location: 54137 - 55285 (+)
Gene ID: HRGMv2_1781_19_50
Type: pfam
Location: 55282 - 55596 (+)
Gene ID: HRGMv2_1781_19_51
Type: CAZyme
Location: 55651 - 57015 (-)
Gene ID: HRGMv2_1781_19_52
Type: TC
Location: 57112 - 58500 (-)
Gene ID: HRGMv2_1781_19_53
Type: TF
Location: 58570 - 59580 (-)
Gene ID: HRGMv2_1781_19_54
Type: TC
Location: 59887 - 61266 (-)
Gene ID: HRGMv2_1781_19_55
Type: pfam
Location: 61371 - 61961 (-)
Gene ID: HRGMv2_1781_19_56
Type: TC
Location: 62017 - 63282 (-)
Gene ID: HRGMv2_1781_19_57
Type: CAZyme
Location: 63324 - 65447 (-)
Gene ID: HRGMv2_1781_19_58
Type: TF
Location: 65562 - 66557 (-)
Gene ID: HRGMv2_1781_19_59
Type: TC
Location: 66664 - 67941 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_19_49 vegan > omnivore 1.60815 0.03414
HRGMv2_1781_19_49 vegetarian > omnivore 1.22047 0.00229
HRGMv2_1781_19_50 vegetarian > omnivore 2.93664 0.00414
HRGMv2_1781_19_56 vegetarian > omnivore 2.06740 0.01730
HRGMv2_1781_19_56 vegetarian > vegan 1.04867 0.04871
HRGMv2_1781_19_57 vegetarian > omnivore 1.60330 0.04703

🧭 Explore Read Mapping of CGC

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