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Cluster: HRGMv2_1781_CGC65

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1781_16 HRGMv2_1781_16_42 42614 44014 - GH1
CAZyme HRGMv2_1781_16 HRGMv2_1781_16_43 44069 46264 - CBM35 | GH5_41
TC HRGMv2_1781_16 HRGMv2_1781_16_44 46277 47614 - 1.B.3.1.1
TC HRGMv2_1781_16 HRGMv2_1781_16_45 47838 49109 - 4.A.3.2.6
TC HRGMv2_1781_16 HRGMv2_1781_16_46 49284 49598 + 4.A.3.2.9
TC HRGMv2_1781_16 HRGMv2_1781_16_47 49608 50930 + 4.A.3.2.6
TC HRGMv2_1781_16 HRGMv2_1781_16_48 50954 51268 + 4.A.3.2.7
STP HRGMv2_1781_16 HRGMv2_1781_16_49 51476 52390 + Glucokinase
TF HRGMv2_1781_16 HRGMv2_1781_16_50 52447 53409 + LacI
TC HRGMv2_1781_16 HRGMv2_1781_16_51 53588 54505 + 3.A.1.15.7
TC HRGMv2_1781_16 HRGMv2_1781_16_52 54502 55323 + 3.A.1.15.7
TC HRGMv2_1781_16 HRGMv2_1781_16_53 55320 56168 + 3.A.1.15.7
TC HRGMv2_1781_16 HRGMv2_1781_16_54 56162 57016 + 3.A.1.15.7
pfam HRGMv2_1781_16 HRGMv2_1781_16_55 57141 57485 - YgbA_NO
pfam HRGMv2_1781_16 HRGMv2_1781_16_56 57560 57844 - Rdx
TC HRGMv2_1781_16 HRGMv2_1781_16_57 58060 60429 + 1.B.14.2.7
pfam HRGMv2_1781_16 HRGMv2_1781_16_58 60501 61541 + HemS | HemS | ChuX_HutX | ChuX_HutX
TC HRGMv2_1781_16 HRGMv2_1781_16_59 61538 62356 + 3.A.1.14.16
TC HRGMv2_1781_16 HRGMv2_1781_16_60 62356 63351 + 3.A.1.14.5
TC HRGMv2_1781_16 HRGMv2_1781_16_61 63344 64123 + 3.A.1.14.16
Gene ID: HRGMv2_1781_16_42
Type: CAZyme
Location: 42614 - 44014 (-)
Gene ID: HRGMv2_1781_16_43
Type: CAZyme
Location: 44069 - 46264 (-)
Gene ID: HRGMv2_1781_16_44
Type: TC
Location: 46277 - 47614 (-)
Gene ID: HRGMv2_1781_16_45
Type: TC
Location: 47838 - 49109 (-)
Gene ID: HRGMv2_1781_16_46
Type: TC
Location: 49284 - 49598 (+)
Gene ID: HRGMv2_1781_16_47
Type: TC
Location: 49608 - 50930 (+)
Gene ID: HRGMv2_1781_16_48
Type: TC
Location: 50954 - 51268 (+)
Gene ID: HRGMv2_1781_16_49
Type: STP
Location: 51476 - 52390 (+)
Gene ID: HRGMv2_1781_16_50
Type: TF
Location: 52447 - 53409 (+)
Gene ID: HRGMv2_1781_16_51
Type: TC
Location: 53588 - 54505 (+)
Gene ID: HRGMv2_1781_16_52
Type: TC
Location: 54502 - 55323 (+)
Gene ID: HRGMv2_1781_16_53
Type: TC
Location: 55320 - 56168 (+)
Gene ID: HRGMv2_1781_16_54
Type: TC
Location: 56162 - 57016 (+)
Gene ID: HRGMv2_1781_16_55
Type: pfam
Location: 57141 - 57485 (-)
Gene ID: HRGMv2_1781_16_56
Type: pfam
Location: 57560 - 57844 (-)
Gene ID: HRGMv2_1781_16_57
Type: TC
Location: 58060 - 60429 (+)
Gene ID: HRGMv2_1781_16_58
Type: pfam
Location: 60501 - 61541 (+)
Gene ID: HRGMv2_1781_16_59
Type: TC
Location: 61538 - 62356 (+)
Gene ID: HRGMv2_1781_16_60
Type: TC
Location: 62356 - 63351 (+)
Gene ID: HRGMv2_1781_16_61
Type: TC
Location: 63344 - 64123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_16_54 vegetarian > omnivore 1.72212 0.04703

🧭 Explore Read Mapping of CGC

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