Cluster: HRGMv2_1781_CGC61
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1781
- CGC Family ID: CGCFAM_00373
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1781_15 | HRGMv2_1781_15_64 | 67989 | 70787 | + | 3.A.23.1.1 |
| TC | HRGMv2_1781_15 | HRGMv2_1781_15_65 | 70908 | 71333 | + | 4.A.6.1.17 |
| TC | HRGMv2_1781_15 | HRGMv2_1781_15_66 | 71346 | 71831 | + | 4.A.6.1.17 |
| TC | HRGMv2_1781_15 | HRGMv2_1781_15_67 | 71857 | 72606 | + | 4.A.6.1.17 |
| TC | HRGMv2_1781_15 | HRGMv2_1781_15_68 | 72606 | 73463 | + | 4.A.6.1.17 |
| pfam | HRGMv2_1781_15 | HRGMv2_1781_15_69 | 73467 | 74576 | + | SelA |
| pfam | HRGMv2_1781_15 | HRGMv2_1781_15_70 | 74563 | 75306 | + | KDGP_aldolase |
| TC | HRGMv2_1781_15 | HRGMv2_1781_15_71 | 75464 | 76123 | - | 1.C.113.1.10 |
| pfam | HRGMv2_1781_15 | HRGMv2_1781_15_72 | 76286 | 76597 | - | ASCH |
| TF | HRGMv2_1781_15 | HRGMv2_1781_15_73 | 76621 | 77376 | + | HTH_6 |
| CAZyme | HRGMv2_1781_15 | HRGMv2_1781_15_74 | 77498 | 78931 | + | GH1 |
Gene ID: HRGMv2_1781_15_64
Type: TC
Location: 67989 - 70787 (+)
Type: TC
Location: 67989 - 70787 (+)
Gene ID: HRGMv2_1781_15_65
Type: TC
Location: 70908 - 71333 (+)
Type: TC
Location: 70908 - 71333 (+)
Gene ID: HRGMv2_1781_15_66
Type: TC
Location: 71346 - 71831 (+)
Type: TC
Location: 71346 - 71831 (+)
Gene ID: HRGMv2_1781_15_67
Type: TC
Location: 71857 - 72606 (+)
Type: TC
Location: 71857 - 72606 (+)
Gene ID: HRGMv2_1781_15_68
Type: TC
Location: 72606 - 73463 (+)
Type: TC
Location: 72606 - 73463 (+)
Gene ID: HRGMv2_1781_15_69
Type: pfam
Location: 73467 - 74576 (+)
Type: pfam
Location: 73467 - 74576 (+)
Gene ID: HRGMv2_1781_15_70
Type: pfam
Location: 74563 - 75306 (+)
Type: pfam
Location: 74563 - 75306 (+)
Gene ID: HRGMv2_1781_15_71
Type: TC
Location: 75464 - 76123 (-)
Type: TC
Location: 75464 - 76123 (-)
Gene ID: HRGMv2_1781_15_72
Type: pfam
Location: 76286 - 76597 (-)
Type: pfam
Location: 76286 - 76597 (-)
Gene ID: HRGMv2_1781_15_73
Type: TF
Location: 76621 - 77376 (+)
Type: TF
Location: 76621 - 77376 (+)
Gene ID: HRGMv2_1781_15_74
Type: CAZyme
Location: 77498 - 78931 (+)
Type: CAZyme
Location: 77498 - 78931 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella grimontii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1781_15_73 | vegetarian > omnivore | 1.07366 | 0.02860 |
| HRGMv2_1781_15_73 | vegetarian > vegan | 1.44727 | 0.04473 |
| HRGMv2_1781_15_74 | vegan > omnivore | 1.55556 | 0.03414 |
| HRGMv2_1781_15_74 | vegetarian > omnivore | 1.02564 | 0.04839 |